GitHub
literature-search
Comprehensive scientific literature search across PubMed, arXiv, bioRxiv, medRxiv. Natural language queries powered by Valyu semantic search.
☆ 21View skill
blockchain computational chemistry AI Skills
Discover blockchain computational chemistry skills, compare source repositories and read the instructions for each workflow.
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GitHub
clinical-trials-search
Search ClinicalTrials.gov with natural language queries. Find clinical trials, enrollment, and outcomes using Valyu semantic search.
☆ 21View skill
GitHub
biomedical-search
Complete biomedical information search combining PubMed, preprints, clinical trials, and FDA drug labels. Powered by Valyu semantic search.
☆ 21View skill
GitHub
drug-discovery-search
End-to-end drug discovery platform combining ChEMBL compounds, DrugBank, targets, and FDA labels. Natural language powered by Valyu.
☆ 21View skill
GitHub
chembl-search
Search ChEMBL bioactive molecules database with natural language queries. Find compounds and assay data with Valyu semantic search.
☆ 21View skill
GitHub
open-targets-search
Search Open Targets drug-disease associations with natural language queries. Target validation powered by Valyu semantic search.
☆ 21View skill
GitHub
drugbank-search
Search DrugBank comprehensive drug database with natural language queries. Drug mechanisms, interactions, and safety data powered by Valyu.
☆ 21View skill
GitHub
drug-labels-search
Search FDA drug labels with natural language queries. Official drug information, indications, and safety data via Valyu.
☆ 21View skill
GitHub
pm-prioritization
Feature prioritization frameworks - RICE scoring, ICE scoring, and Opportunity Solution Trees.
☆ 20View skill
GitHub
drama-workflow
Coordinate plot point dramatic function analysis process, manage text preprocessing, parallel analysis, result integration. Suitable for plot point and dramatic function analysis of long texts, scenarios requir...
☆ 20View skill
GitHub
research
Diagnose research quality and guide systematic query expansion. Use when starting research on any topic, when stuck in research, or when unsure if research is complete.
☆ 20View skill
GitHub
llm-council
Multi-model consensus using Karpathy LLM Council pattern for critical decisions
☆ 20View skill
GitHub
reconnaissance
Systematic technology and market reconnaissance for extracting actionable intelligence from repositories, papers, and competitive landscapes.
☆ 20View skill
GitHub
clonalstats
Generate comprehensive clonality statistics and diversity visualizations for TCR/BCR repertoire analysis. Quantifies clonal expansion, measures diversity metrics (Shannon, Simpson, Gini), and creates publicatio...
☆ 20View skill
GitHub
cellcellcommunicationplots
Visualize cell-cell communication inference results from CellCellCommunication process. Creates publication-ready network diagrams, heatmaps, and interaction plots to help interpret ligand-receptor interactions...
☆ 20View skill
GitHub
cdr3clustering
Cluster TCR/BCR clones by CDR3 sequences using GIANA or ClusTCR (both Faiss-based). Adds `CDR3_Cluster` column to metadata for clonotype analysis.
☆ 20View skill
GitHub
immunopipe-config
Master skill for generating immunopipe pipeline configurations. Determines pipeline architecture based on data type (scRNA-seq with or without scTCR/BCR-seq) and analysis requirements. Routes to individual proc...
☆ 20View skill
GitHub
modulescorecalculator
Configuration skill for immunopipe process
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GitHub
reasoning-inductive
Extract patterns and generalizations from multiple observations. Use when detecting recurring themes, building predictive rules, or identifying systemic behaviors from accumulated data. Produces validated patte...
☆ 20View skill
GitHub
hypothesis-testing
Guides scientific hypothesis development and testing methodology. Use when formulating research questions, developing testable hypotheses, designing experiments, or evaluating research approaches. Triggers on p...
☆ 18View skill
GitHub
critical-analysis
Applies rigorous critical analysis to evaluate claims, arguments, and research. Use when evaluating evidence quality, peer reviewing content, assessing argument validity, or identifying weaknesses in reasoning....
☆ 18View skill
GitHub
research-synthesis
Synthesizes research findings into coherent narratives with uncertainty quantification. Use when integrating findings from multiple sources, creating research summaries, drawing conclusions from evidence, or co...
☆ 18View skill
GitHub
model-evaluation-benchmark
Automated reproduction of comprehensive model evaluation benchmarks following the Benchmark Suite V3. Auto-activates for model benchmarking, comparison evaluation, or performance testing between AI models.
☆ 16View skill
GitHub
chemist-analyst
Analyzes events through chemistry lens using molecular structure, reaction mechanisms, thermodynamics, kinetics, and analytical techniques (spectroscopy, chromatography, mass spectrometry). Provides insights on...
☆ 16View skill
The default order uses GitHub repository stars from our indexed data. Stars belong to the source repository and may be shared by multiple skills. They indicate repository interest, not skill installs or an independent quality score.