immunopipe-config

Features and purpose

Master skill for generating immunopipe pipeline configurations. Determines pipeline architecture based on data type (scRNA-seq with or without scTCR/BCR-seq) and analysis requirements. Routes to individual process skills for detailed configuration. Use this skill when starting a new immunopipe configuration or modifying pipeline-level options.

Quick start

Follow the repository instructions for this skill and your agent. Review the files and dependencies before adding it to your workflow.