GitHub
dnanexus-integration
DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.
☆ 3View skill
Search results for “Python”
Skills matching the name, description or GitHub author.
Categories: Tools
Browse skills
GitHub
modal
Run Python code in the cloud with serverless containers, GPUs, and autoscaling. Use when deploying ML models, running batch processing jobs, scheduling compute-intensive tasks, or serving APIs that require GPU...
☆ 3View skill
GitHub
gget
Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold structures, enrichment analysis. Best for interactive exploration, simple queries. For batch...
☆ 3View skill
GitHub
pubmed-database
Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work o...
☆ 3View skill
GitHub
omero-integration
Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.
☆ 3View skill
GitHub
uniprot-database
Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workflows with multiple databases, prefer bioservices (unified interface to 40+ services). Use thi...
☆ 3View skill
GitHub
fluidsim
Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when ana...
☆ 3View skill
GitHub
sympy
Use this skill when working with symbolic mathematics in Python. This skill should be used for symbolic computation tasks including solving equations algebraically, performing calculus operations (derivatives,...
☆ 3View skill
GitHub
biopython
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioin...
☆ 3View skill
GitHub
rowan
Cloud-based quantum chemistry platform with Python API. Preferred for computational chemistry workflows including pKa prediction, geometry optimization, conformer searching, molecular property calculations, pro...
☆ 3View skill
GitHub
python
Guidelines when creating, reading, updating, or deleting Python code
☆ 3View skill
GitHub
pop-worktree-manager
Python-based git worktree manager with 8 operations: list, create, remove, switch, update-all, prune, init, analyze. Handles cross-platform paths, STATUS.json integration, protected branch safety. Use this skil...
☆ 3View skill
GitHub
cheatsheets
Quick reference cheatsheets for Kailash SDK patterns, nodes, workflows, and best practices. Use when asking about 'quick tips', 'cheat sheet', 'quick reference', 'common mistakes', 'node selection', 'workflow p...
☆ 3View skill
GitHub
core-sdk
Kailash Core SDK fundamentals including workflow creation, node patterns, connections, runtime execution, parameter passing, error handling, cyclic workflows, async patterns, MCP integration, and installation....
☆ 3View skill
GitHub
secure-container-build
Build secure container images with Wolfi runtime, non-root users, and multi-stage builds. Templates for Python/uv, Bun, Node.js/pnpm, Golang (static/CGO), and Rust (glibc/musl) with allocator optimization
☆ 3View skill
GitHub
browser-automation
Local Python-based browser automation toolkit using Playwright. Provides command-line tools for navigating, interacting with, and testing web applications. Supports clicking, typing, hovering, screenshots, cont...
☆ 3View skill
GitHub
python-standards
Modern Python development with uv, ruff, mypy, and pytest. Use when: - Writing or reviewing Python code - Setting up Python projects or pyproject.toml - Choosing dependency management (uv, poetry, pip) - Config...
☆ 3View skill
GitHub
python-cli
Universal Python CLI development patterns and best practices
☆ 3View skill
GitHub
python-guidelines
Universal Python development guidelines and best practices
☆ 3View skill
GitHub
python-standards
Python code quality standards (PEP 8, type hints, docstrings). Use when writing Python code.
☆ 3View skill
GitHub
lseg-data
This skill should be used when the user asks to "access LSEG data", "query Refinitiv", "get market data from Refinitiv", "download fundamentals from LSEG", "access ESG scores", "convert RIC to ISIN", or needs t...
☆ 3View skill
GitHub
marimo
This skill should be used when the user asks to "use marimo", "create a marimo notebook", "debug a marimo notebook", "inspect cells", "understand reactive execution", "fix marimo errors", "convert from jupyter...
☆ 3View skill
GitHub
jupytext
This skill should be used when the user asks to "convert notebook to text", "use jupytext", "version control notebooks", "share data between kernels", "set up multi-kernel project", "pair notebooks with Python...
☆ 3View skill
GitHub
code-style-checker
Checks python code for use of print statements and suggests using logging instead. Use this when the user asks to review code or check for bad practices.
☆ 3View skill
Popular categories
The default order uses GitHub repository stars from our indexed data. Stars belong to the source repository and may be shared by multiple skills. They indicate repository interest, not skill installs or an independent quality score.