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pubmed-database

davila7

Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work o...

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GitHub

pubmed-database

K-Dense-AI

Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work o...

GitHub

arxiv-search

spring-ai-alibaba

Search arXiv preprint repository for papers in physics, mathematics, computer science, quantitative biology, and related fields, Instructions for searching arXiv papers using Python script and shell tool. Read...

GitHub

biopython

lifangda

Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures,...

GitHub

skill-python-research

benbrastmckie

Research Python/Z3 patterns and APIs for semantic theory development. Invoke for Python-language research tasks.

GitHub

text-analyst

nealcaren

Computational text analysis for sociology research using R or Python. Guides you through topic models, sentiment analysis, classification, and embeddings with systematic validation. Supports both traditional (L...

GitHub

paper-to-code

aryateja2106

Implement AI/ML research papers from scratch when no official code exists. Use when the user wants to reproduce a paper, implement an algorithm from a PDF, build a model architecture from a research paper, or c...

GitHub

rag

rukikotoo

查询计量经济学RAG知识库。当用户输入以"rag:"开头时,LLM会使用Python查询Bruce Hansen计量经济学教材的RAG数据库,返回相关文档内容。

GitHub

pubmed-database

hxk622

Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work o...

GitHub

perplexity-tools

bsamiee

Executes Perplexity AI queries via unified Python CLI. Use when conducting web research, asking questions with citations, deep research tasks, reasoning problems, or searching for up-to-date information.

GitHub

airalogy-protocol

airalogy

Expert guide for creating Airalogy Protocols (AIMD), Assigners (Python logic), and Validation Models. Use this to design digital workflows and experiments.

GitHub

seo-optimizer

yoshiwatanabe

Analyze and optimize text for search engines. Execute Python script for detailed SEO analysis. Use when optimizing for keywords, search visibility, or content structure.

GitHub

readability-scorer

yoshiwatanabe

Assess text readability using multiple metrics. Execute Python script for detailed readability analysis. Use when evaluating text complexity, comprehension level, or audience fit.

GitHub

text-analyzer

yoshiwatanabe

Comprehensive text analysis coordinator. Execute Python script for multi-aspect text analysis. Use when you need grammar, sentiment, readability, and SEO analysis combined.

GitHub

grimoire-query

jamesainslie

Use when you need programming best practices, patterns, or documentation. Queries the Grimoire knowledge base for curated guidance on Go, Rust, Python, and more. Invoke before implementing features, debugging,...

GitHub

life-sciences-connector

dredd-us

Query PubMed and scientific databases for protocols, analyze biological data with Biopython, handle HIPAA-compliant data. Use for biology research, protocol searches, sequence analysis, or scientific data handl...

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