GitHub
mimic-eicu-mapping
Map equivalent concepts between MIMIC-IV and eICU databases. Use for multi-database studies, external validation, or understanding structural differences between databases.
☆ 12View skill
tools computational chemistry AI Skills
Discover tools computational chemistry skills, compare source repositories and read the instructions for each workflow.
Categories: tools computational chemistry
tools computational chemistry Clear filters
Browse skills
GitHub
sirs-criteria
Calculate SIRS (Systemic Inflammatory Response Syndrome) criteria for ICU patients in MIMIC-IV. Use for historical sepsis definitions, inflammatory response assessment, or research comparing SIRS vs Sepsis-3.
☆ 12View skill
GitHub
skill-model-checker
Research and develop semantic theories using ModelChecker with Z3 SMT solver. Define operators, adjust frame constraints, create examples, run tests, and report findings. Invoke with /mc or when working with mo...
☆ 12View skill
GitHub
skill-researcher
Conduct general research using web search, documentation, and codebase exploration. Invoke for non-Lean research tasks.
☆ 12View skill
GitHub
skill-python-research
Research Python/Z3 patterns and APIs for semantic theory development. Invoke for Python-language research tasks.
☆ 12View skill
GitHub
checking-chembl-for-structured-sar-data
Check if medicinal chemistry papers are in ChEMBL database to access curated bioactivity data
☆ 12View skill
GitHub
subagent-driven-literature-review
Use parallel subagents for large-scale paper screening and deep dive analysis
☆ 12View skill
GitHub
sampler
Launch and manage D3 (DNA Discrete Diffusion) sampling experiments on SLURM clusters. This skill handles job submission, WandB tracking, and result management for genomic datasets (LentiMPRA, DeepSTARR, Promote...
☆ 11View skill
GitHub
effect-regex
Expert regex pattern generation, optimization, testing, and explanation using deterministic AST-based construction. Use when user needs to create, test, optimize, or understand regex patterns, parse CLI command...
☆ 11View skill
GitHub
malware-report-writer
Professional malware analysis report creation for enterprise malware analysis and incident response. Use when the user needs to create, structure, or improve a malware analysis report, write technical documenta...
☆ 11View skill
GitHub
malware-triage
Systematic malware triage and initial assessment workflow for professional malware analysis. Use when the user needs to perform initial malware assessment, classify samples, determine analysis priority, identif...
☆ 11View skill
GitHub
detection-engineer
Create detection rules and hunting queries from malware analysis findings. Use when you need to write Sigma rules for SIEM, Suricata rules for network IDS, defang IOCs for safe sharing, or convert analysis find...
☆ 11View skill
GitHub
evaluation-harness
Builds repeatable evaluation systems with golden datasets, scoring rubrics, pass/fail thresholds, and regression reports. Use for "LLM evaluation", "testing AI systems", "quality assurance", or "model benchmark...
☆ 10View skill
GitHub
threat-model-generator
Creates comprehensive threat models using STRIDE methodology with asset identification, threat enumeration, mitigation strategies, and residual risk assessment. Use for "threat modeling", "security analysis", "...
☆ 10View skill
GitHub
structural-biology
Structural biology analysis including protein structure validation, AlphaFold interpretation, and structural comparisons
☆ 10View skill
GitHub
metabolomics
Metabolomics-specific analysis strategies and domain knowledge
☆ 10View skill
GitHub
check
Full Reality Check analysis - fetch source, perform 3-stage analysis, extract claims, register to database, and validate. The flagship command for rigorous source analysis.
☆ 10View skill
GitHub
factory-spec
Phase MODEL - Génère specs + ADR + rules
☆ 10View skill
GitHub
clinical-trial-matcher
Matches patient profiles to open clinical trials using vector similarity and inclusion/exclusion criteria. Use when a user provides patient data and asks for relevant trials.
☆ 9View skill
GitHub
regulatory-drafter
Drafts regulatory documents (FDA, EMA) with audit trails and specific "Thinking Block" reasoning. Use for high-stakes compliance writing.
☆ 9View skill
GitHub
protein-structure-prediction
Predicts 3D protein structures from amino acid sequences using ESMFold or AlphaFold3 (mock).
☆ 9View skill
GitHub
crispr-designer
Designs guide RNA (gRNA) sequences for CRISPR-Cas9 editing, including off-target analysis. Use when a user needs to edit a gene or asks for gRNA sequences.
☆ 9View skill
GitHub
chemcrow-tools
A production-grade cheminformatics toolkit for analyzing molecular properties, toxicity, and synthetic accessibility.
☆ 9View skill
GitHub
multimodal-medical-imaging
Analyzes medical images (X-ray, MRI, CT) using multimodal LLMs to identify anomalies and generate reports.
☆ 9View skill
The default order uses GitHub repository stars from our indexed data. Stars belong to the source repository and may be shared by multiple skills. They indicate repository interest, not skill installs or an independent quality score.