GitHub
universal-single-cell-annotator
A unified interface for annotating single-cell RNA-seq data using Marker Genes, Deep Learning (CellTypist), or LLMs.
☆ 9View skill
documentation scientific computing AI Skills
Discover documentation scientific computing skills, compare source repositories and read the instructions for each workflow.
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GitHub
variant-interpretation-acmg
Classifies genetic variants according to ACMG (American College of Medical Genetics) guidelines.
☆ 9View skill
GitHub
rd-management
R&D management expertise for R&D portfolio management, technology roadmapping, research methodology, patent strategy, lab management, academic partnerships, and regulatory pathways. Use when managing research p...
☆ 9View skill
GitHub
research
Comprehensive research, analysis, and content extraction system. Multi-source parallel research using available researcher agents. Deep content analysis with extended thinking. Intelligent retrieval for difficu...
☆ 9View skill
GitHub
run-deep-research
Toolkit for performing deep research on complex topics using multiple AI research providers (OpenAI, Falcon, Perplexity, Consensus). Emphasizes explicit speed vs depth trade-offs.
☆ 9View skill
GitHub
gene-set-enrichment
Perform gene set enrichment analysis using AI research providers. Analyzes lists of genes to identify biological themes, pathways, and functional associations.
☆ 9View skill
GitHub
data-analyzer
Analyzes datasets to extract insights, identify patterns, and create visualizations. This skill should be used when users want to explore data, perform statistical analysis, identify trends, or visualize patter...
☆ 9View skill
GitHub
hepdata
Use when the user mentions 'HEPData' or asks to find experimental data, download data tables from HEP papers, get digitized plots, or retrieve cross-section measurements. HEPData contains data points behind fig...
☆ 9View skill
GitHub
astrophysics-analysis
This skill should be used when the user asks to "analyze astronomical data", "process FITS files", "create sky maps", "work with cosmological simulations", "fit spectral data", "calculate redshifts", "analyze l...
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GitHub
denario
Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing re...
☆ 9View skill
GitHub
geniml
This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), buil...
☆ 9View skill
GitHub
gtars
High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment...
☆ 9View skill
GitHub
exploratory-data-analysis
Analyze datasets to discover patterns, anomalies, and relationships. Use when exploring data files, generating statistical summaries, checking data quality, or creating visualizations. Supports CSV, Excel, JSON...
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GitHub
pyopenms
Python interface to OpenMS for mass spectrometry data analysis. Use for LC-MS/MS proteomics and metabolomics workflows including file handling (mzML, mzXML, mzTab, FASTA, pepXML, protXML, mzIdentML), signal pro...
☆ 9View skill
GitHub
hypogenic
Automated hypothesis generation and testing using large language models. Use this skill when generating scientific hypotheses from datasets, combining literature insights with empirical data, testing hypotheses...
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GitHub
understand
Multi-specialist collaborative analysis to understand how features, functions, or components work
☆ 9View skill
GitHub
biomni
Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical rese...
☆ 9View skill
GitHub
bsee-sodir-extraction
Extract and process energy data from BSEE (Gulf of Mexico) and SODIR (Norway) regulatory databases
☆ 8View skill
GitHub
research
Diagnose research quality and guide systematic query expansion. Use when starting research on any topic, when stuck in research, or when unsure if research is complete.
☆ 7View skill
GitHub
healthsim-membersim
MemberSim generates realistic synthetic claims and payer data for testing claims processing systems, payment integrity, and benefits administration.
☆ 7View skill
GitHub
healthsim-trialsim
Generate realistic clinical trial synthetic data including study definitions, sites, subjects, visits, adverse events, efficacy assessments, and disposition. Use when user requests: clinical trial data, CDISC/S...
☆ 7View skill
GitHub
running-clustering-algorithms
Execute clustering algorithms (K-means, DBSCAN, hierarchical) to identify data groups. Use when requesting "run clustering", "cluster analysis", or "group data points".
☆ 7View skill
GitHub
splitting-datasets
Split datasets into training, validation, and testing sets for ML model development. Use when requesting "split dataset", "train-test split", or "data partitioning".
☆ 7View skill
GitHub
detecting-memory-leaks
Detect potential memory leaks and analyze memory usage patterns in code. Use when troubleshooting performance issues related to memory growth or identifying leak sources. Trigger with phrases like "detect memor...
☆ 7View skill
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