Discover documentation scientific computing skills, compare source repositories and read the instructions for each workflow.
Protein structure and interaction analysis using gcell. Use this skill when users ask about: - Protein sequences from gene names - AlphaFold2 structure predictions and pLDDT scores - UniProt protein information...
Start a structured clinical research session. Triggers on "/research", "start research", "new study", "analyze cohort", "investigate hypothesis", "research question", or when users describe clinical research go...
Avoid common methodological mistakes in clinical research with MIMIC-IV and eICU databases. Covers immortal time bias, information leakage, selection bias, and other critical pitfalls.
Identify suspected infection events in MIMIC-IV using antibiotic administration plus culture timing. Use as a component of Sepsis-3 definition or for infection research.
Use the M4 Python API to query clinical datasets (MIMIC-IV, eICU) programmatically. Triggers on "M4 API", "query MIMIC with Python", "clinical data analysis", "EHR data", "execute SQL on MIMIC", or when writing...
Map equivalent concepts between MIMIC-IV and eICU databases. Use for multi-database studies, external validation, or understanding structural differences between databases.
Conduct general research using web search, documentation, and codebase exploration. Invoke for non-Lean research tasks.
Research Python/Z3 patterns and APIs for semantic theory development. Invoke for Python-language research tasks.
Check if medicinal chemistry papers are in ChEMBL database to access curated bioactivity data
Use parallel subagents for large-scale paper screening and deep dive analysis
Launch and manage D3 (DNA Discrete Diffusion) sampling experiments on SLURM clusters. This skill handles job submission, WandB tracking, and result management for genomic datasets (LentiMPRA, DeepSTARR, Promote...
Research methodology and best practices for finding existing patterns
Computational text analysis for sociology research using R or Python. Guides you through topic models, sentiment analysis, classification, and embeddings with systematic validation. Supports both traditional (L...
Structural biology analysis including protein structure validation, AlphaFold interpretation, and structural comparisons
Metabolomics-specific analysis strategies and domain knowledge
Genomics and transcriptomics analysis strategies
Generate evidence-based documentary reports by searching across all 4 memory systems (Claude-Mem, Forgetful, Serena, DeepWiki), .agents/ artifacts, and GitHub issues. Produces investigative journalism-style ana...
Electronic circuit simulation and SPICE analysis via ngspice MCP tool
Deep web research with parallel investigators, multi-wave exploration, and structured synthesis. Spawns multiple web-researcher agents to explore different facets of a topic simultaneously, launches additional...
Matches patient profiles to open clinical trials using vector similarity and inclusion/exclusion criteria. Use when a user provides patient data and asks for relevant trials.
Drafts regulatory documents (FDA, EMA) with audit trails and specific "Thinking Block" reasoning. Use for high-stakes compliance writing.
Predicts 3D protein structures from amino acid sequences using ESMFold or AlphaFold3 (mock).
Designs guide RNA (gRNA) sequences for CRISPR-Cas9 editing, including off-target analysis. Use when a user needs to edit a gene or asks for gRNA sequences.
A production-grade cheminformatics toolkit for analyzing molecular properties, toxicity, and synthetic accessibility.
The default order uses GitHub repository stars from our indexed data. Stars belong to the source repository and may be shared by multiple skills. They indicate repository interest, not skill installs or an independent quality score.