celltypeannotation
Annotates cell clusters with biological cell type labels using multiple methods: direct assignment, ScType, scCATCH, hitype, or CellTypist. This process is essential for interpreting clustering results by assig...
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Annotates cell clusters with biological cell type labels using multiple methods: direct assignment, ScType, scCATCH, hitype, or CellTypist. This process is essential for interpreting clustering results by assig...
Comprehensive metabolic landscape analysis pipeline for scRNA-seq data. This is an all-in-one process group performing complete metabolic pathway analysis including expression imputation, feature selection, pat...
Performs coarse clustering on ALL cells (including T cells, B cells, and non-T/B cells) before cell type selection. This process identifies broad cell populations to enable subsequent T/B cell selection via `TO...
Finds marker genes for clusters of ALL cells before T/B cell selection. This process identifies differentially expressed genes across unsupervised clusters to help identify broad cell types (T cells, B cells, M...
Finds differentially expressed genes (markers) for clusters of T/B cells using Seurat's FindMarkers function. Performs statistical testing between clusters, identifies cluster-defining genes, and automatically...
Performs pseudo-bulk differential gene expression analysis using DESeq2 or edgeR. Aggregates single-cell counts to sample-level pseudo-bulk data, then identifies differentially expressed genes between condition...
Analyzes metabolic pathway heterogeneity within cell populations by calculating normalized enrichment scores (NES) for each pathway across different groups. Quantifies metabolic diversity and identifies pathway...
Infer ligand-receptor interactions and cell-cell communication networks from single-cell RNA-seq data using the LIANA+ framework. Identifies potential signaling events between cell types based on gene expressio...
高级生命周期专家。处理 HRTB, GAT, 'static 约束, dyn trait object, 泛型边界冲突等问题。触发词:lifetime, HRTB, GAT, 'static, dyn, trait object, one type is more general, 生命周期, 类型约束
并发与异步专家。处理 Send, Sync, thread, async, await, tokio, channel, Mutex, deadlock, race condition, 并发, 异步, 死锁等问题。触发词:thread, spawn, channel, mpsc, Mutex, RwLock, Atomic, async, await, Future,...
高级异步模式专家。处理 Stream 实现, 零拷贝, tokio::spawn 生命周期, 插件系统调度, tonic 流式响应等问题。触发词:async, Stream, tokio::spawn, 零拷贝, 插件系统, tonic, 流式, BorrowedMessage, 异步调度
类型驱动设计专家。处理 newtype, type state, PhantomData, marker trait, builder pattern, 类型状态, 新类型模式, 编译时验证, sealed trait, ZST
可变性专家。处理 E0596, E0499, E0502, interior mutability, Cell, RefCell, Mutex, RwLock, borrow conflict, 可变性, 内部可变性, 借用冲突
高级异步模式专家。处理 Stream, backpressure, select, join, cancellation, Future trait 等问题。触发词:async, Stream, backpressure, select, Future, tokio, async-std, 异步, 流, 取消
深入错误处理专家。处理 Result vs Option, thiserror, anyhow, error context, library vs application errors, 错误处理, Result 用法, 什么时候用 panic
Execute evidence-based decision-making through 6-stage causal flow. Use for known processes, operational execution, and decisions with clear cause-effect chains.
Track goal progress, derive state from execution, identify gaps, trigger actions. Use for goal status checks, progress reviews, and operational goal management.
Transform objectives into structured goals with plans. Use when user declares intent ("I want to...", "Goal is to...", "Achieve X by Y"). Decomposes into subgoals, milestones, success criteria.
iOS HealthKit data sync CLI commands and patterns. Use when working with healthsync CLI, fetching Apple Health data (steps, heart rate, sleep, workouts), pairing iOS devices over local network, or understanding...
基于 docs/ARCHITECTURE.md 的规范,安全地实现新功能或优化现有代码。
Evaluate alternative scenarios by simulating interventions on past decisions or hypothetical futures. Use when assessing decisions in hindsight, planning scenarios, or comparing paths not taken. Produces compar...
Plans technical projects with risk-first development, milestone structuring, and managed deferral. Use when planning software projects, defining milestones, structuring development phases, or breaking down comp...
Use when the user asks for a roadmap, timeline, phased plan, or execution sequence.
Market analysis and competitive intelligence for startups. Use when analyzing market opportunities, sizing TAM, profiling segments, or mapping competition.
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