clustermarkers

Features and purpose

Finds differentially expressed genes (markers) for clusters of T/B cells using Seurat's FindMarkers function. Performs statistical testing between clusters, identifies cluster-defining genes, and automatically runs pathway enrichment analysis (via Enrichr) on significant markers. Generates publication-ready visualizations including volcano plots, dot plots, heatmaps, and enrichment plots.

Quick start

Follow the repository instructions for this skill and your agent. Review the files and dependencies before adding it to your workflow.