seuratmap2ref

Features and purpose

Map query single-cell datasets to high-quality reference atlases using Seurat's reference mapping workflow. Performs label transfer, UMAP projection, and integration with reference annotations without modifying query expression data. Enables transfer learning from curated atlases like Azimuth PBMC or custom tissue-specific references.

Quick start

Follow the repository instructions for this skill and your agent. Review the files and dependencies before adding it to your workflow.