GitHub
single-cell-cellphonedb-communication-mapping
Run omicverse's CellPhoneDB v5 wrapper on annotated single-cell data to infer ligand-receptor networks and produce CellChat-style visualisations.
☆ 834Voir le skill
Skills IA tools scientific computing
Découvrez les skills tools scientific computing, comparez leurs dépôts et consultez leurs instructions.
Catégories: tools scientific computing
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Explorer
GitHub
single-cell-clustering-and-batch-correction-with-omicverse
Guide Claude through omicverse's single-cell clustering workflow, covering preprocessing, QC, multimethod clustering, topic modeling, cNMF, and cross-batch integration as demonstrated in t_cluster.ipynb and t_s...
☆ 834Voir le skill
GitHub
single-cell-annotation-skills-with-omicverse
Guide Claude through SCSA, MetaTiME, CellVote, CellMatch, GPTAnno, and weighted KNN transfer workflows for annotating single-cell modalities.
☆ 834Voir le skill
GitHub
single-cell-downstream-analysis
Checklist-style reference for OmicVerse downstream tutorials covering AUCell scoring, metacell DEG, and related exports.
☆ 834Voir le skill
GitHub
research-synthesis-workflow
A step-by-step guide to synthesizing research from multiple sources into a coherent summary.
☆ 552Voir le skill
GitHub
deep-researcher
Performs comprehensive, multi-layered research on any topic with structured analysis and synthesis of information from multiple sources.
☆ 552Voir le skill
GitHub
hypothesis-generation
Generate testable hypotheses. Formulate from observations, design experiments, explore competing explanations, develop predictions, propose mechanisms, for scientific inquiry across domains.
☆ 441Voir le skill
GitHub
tooluniverse
Use this skill when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomics, structural biology, proteomics, and drug discovery. This skill provides access to 600+...
☆ 441Voir le skill
GitHub
research-lookup
Look up current research information using Perplexity's Sonar Pro or Sonar Reasoning Pro models through OpenRouter. Automatically selects the best model based on query complexity. Search academic papers, recent...
☆ 441Voir le skill
GitHub
skill-researcher
Conduct general research using web search, documentation, and codebase exploration. Invoke for non-Lean research tasks.
☆ 431Voir le skill
GitHub
ark-research
Research technical solutions by searching the web, examining GitHub repos, and gathering evidence. Use when exploring implementation options or evaluating technologies.
☆ 319Voir le skill
GitHub
business-analytics-reporter
This skill should be used when analyzing business sales and revenue data from CSV files to identify weak areas, generate statistical insights, and provide strategic improvement recommendations. Use when the use...
☆ 315Voir le skill
GitHub
rdkit
Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows w...
☆ 283Voir le skill
GitHub
pubchem-database
Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). Search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics.
☆ 283Voir le skill
GitHub
pycse
Python computations in science and engineering (pycse) - helps with scientific computing tasks including nonlinear regression, uncertainty quantification, design of experiments (DOE), Latin hypercube sampling,...
☆ 272Voir le skill
GitHub
virus-monitor
Virus-Monitoring für Wien (Abwasser + Sentinel)
☆ 230Voir le skill
GitHub
gemini-deep-research
Perform complex, long-running research tasks using Gemini Deep Research Agent. Use when asked to research topics requiring multi-source synthesis, competitive analysis, market research, or comprehensive technic...
☆ 229Voir le skill
GitHub
nextflow-development
Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core,...
☆ 210Voir le skill
GitHub
scientific-problem-selection
This skill should be used when scientists need help with research problem selection, project ideation, troubleshooting stuck projects, or strategic scientific decisions. Use this skill when users ask to pitch a...
☆ 210Voir le skill
GitHub
clinical-trial-protocol-skill
Generate clinical trial protocols for medical devices or drugs. This skill should be used when users say "Create a clinical trial protocol", "Generate protocol for [device/drug]", "Help me design a clinical stu...
☆ 210Voir le skill
GitHub
single-cell-rna-qc
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering lo...
☆ 210Voir le skill
GitHub
instrument-data-to-allotrope
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS sys...
☆ 210Voir le skill
GitHub
user-research-planning
Plan user research studies - method selection, participant recruitment, study design, and research questions for generative and evaluative research.
☆ 208Voir le skill
GitHub
independent-research
Research-driven investigation skill for validating solutions and exploring documentation. Never ask questions you can answer yourself through research. Use WebFetch, WebSearch, and testing to validate ideas bef...
☆ 190Voir le skill
Le classement utilise les étoiles du dépôt GitHub indexé. Plusieurs skills peuvent partager ce nombre : ce n’est ni un nombre d’installations ni une note de qualité.