GitHub
pyopenms
Python interface to OpenMS for mass spectrometry data analysis. Use for LC-MS/MS proteomics and metabolomics workflows including file handling (mzML, mzXML, mzTab, FASTA, pepXML, protXML, mzIdentML), signal pro...
☆ 18,938查看技能
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final-release-review
Perform a release-readiness review by locating the previous release tag from remote tags and auditing the diff (e.g., v1.2.3...) for breaking changes, regressions, improvement opportunities, and risks before re...
☆ 18,577查看技能
GitHub
code-change-verification
Run the mandatory verification stack when changes affect runtime code, tests, or build/test behavior in the OpenAI Agents Python repository.
☆ 18,577查看技能
GitHub
test-coverage-improver
Improve test coverage in the OpenAI Agents Python repository: run `make coverage`, inspect coverage artifacts, identify low-coverage files, propose high-impact tests, and confirm with the user before writing te...
☆ 18,577查看技能
GitHub
examples-auto-run
Run python examples in auto mode with logging, rerun helpers, and background control.
☆ 18,577查看技能
GitHub
pytest
Pytest testing patterns for Python. Trigger: When writing or refactoring pytest tests (fixtures, mocking, parametrize, markers). For Prowler-specific API/SDK testing conventions, also use prowler-test-api or pr...
☆ 12,916查看技能
GitHub
prowler-test-sdk
Testing patterns for Prowler SDK (Python). Trigger: When writing tests for the Prowler SDK (checks/services/providers), including provider-specific mocking rules (moto for AWS only).
☆ 12,916查看技能
GitHub
ccxt
CCXT cryptocurrency trading library. Use for cryptocurrency exchange APIs, trading, market data, order management, and crypto trading automation across 150+ exchanges. Supports JavaScript/Python/PHP.
☆ 12,819查看技能
GitHub
cryptofeed
Cryptofeed - Real-time cryptocurrency market data feeds from 40+ exchanges. WebSocket streaming, normalized data, order books, trades, tickers. Python library for algorithmic trading and market data analysis.
☆ 12,819查看技能
GitHub
docstring
Document a Python module and its classes using Google style
☆ 10,578查看技能
GitHub
scikit-learn
Machine learning in Python with scikit-learn. Use when working with supervised learning (classification, regression), unsupervised learning (clustering, dimensionality reduction), model evaluation, hyperparamet...
☆ 8,603查看技能
GitHub
pubmed-database
Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work o...
☆ 8,603查看技能
GitHub
modal
Run Python code in the cloud with serverless containers, GPUs, and autoscaling. Use when deploying ML models, running batch processing jobs, scheduling compute-intensive tasks, or serving APIs that require GPU...
☆ 8,603查看技能
GitHub
astropy
Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations,...
☆ 8,603查看技能
GitHub
omero-integration
Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.
☆ 8,603查看技能
GitHub
rowan
Cloud-based quantum chemistry platform with Python API. Preferred for computational chemistry workflows including pKa prediction, geometry optimization, conformer searching, molecular property calculations, pro...
☆ 8,603查看技能
GitHub
gget
Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold structures, enrichment analysis. Best for interactive exploration, simple queries. For batch...
☆ 8,603查看技能
GitHub
biopython
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioin...
☆ 8,603查看技能
GitHub
scikit-survival
Comprehensive toolkit for survival analysis and time-to-event modeling in Python using scikit-survival. Use this skill when working with censored survival data, performing time-to-event analysis, fitting Cox mo...
☆ 8,603查看技能
GitHub
kegg-database
Direct REST API access to KEGG (academic use only). Pathway analysis, gene-pathway mapping, metabolic pathways, drug interactions, ID conversion. For Python workflows with multiple databases, prefer bioservices...
☆ 8,603查看技能
GitHub
networkx
Comprehensive toolkit for creating, analyzing, and visualizing complex networks and graphs in Python. Use when working with network/graph data structures, analyzing relationships between entities, computing gra...
☆ 8,603查看技能
GitHub
sympy
Use this skill when working with symbolic mathematics in Python. This skill should be used for symbolic computation tasks including solving equations algebraically, performing calculus operations (derivatives,...
☆ 8,603查看技能
GitHub
dnanexus-integration
DNAnexus cloud genomics platform. Build apps/applets, manage data (upload/download), dxpy Python SDK, run workflows, FASTQ/BAM/VCF, for genomics pipeline development and execution.
☆ 8,603查看技能
GitHub
bioservices
Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID map...
☆ 8,603查看技能
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