GitHub
reconnaissance
Systematic technology and market reconnaissance for extracting actionable intelligence from repositories, papers, and competitive landscapes.
☆ 20查看技能
tools scientific computing AI 技能
发现 tools scientific computing 相关 Skills，比较来源仓库和用途，查看适合你工作流的技能说明。
分类目录: tools scientific computing
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GitHub
clonalstats
Generate comprehensive clonality statistics and diversity visualizations for TCR/BCR repertoire analysis. Quantifies clonal expansion, measures diversity metrics (Shannon, Simpson, Gini), and creates publicatio...
☆ 20查看技能
GitHub
scfgsea
Performs fast Gene Set Enrichment Analysis (GSEA) on single-cell data using fgsea R package. Identifies enriched biological pathways by ranking genes based on differential expression between cell groups. Genera...
☆ 20查看技能
GitHub
cellcellcommunicationplots
Visualize cell-cell communication inference results from CellCellCommunication process. Creates publication-ready network diagrams, heatmaps, and interaction plots to help interpret ligand-receptor interactions...
☆ 20查看技能
GitHub
metabolicfeatures
Performs enrichment analysis (GSEA-based) for metabolic pathways across different cell groups to identify significantly enriched pathways. Uses fast gene set enrichment analysis (fgsea package) to rank pathways...
☆ 20查看技能
GitHub
cdr3clustering
Cluster TCR/BCR clones by CDR3 sequences using GIANA or ClusTCR (both Faiss-based). Adds `CDR3_Cluster` column to metadata for clonotype analysis.
☆ 20查看技能
GitHub
immunopipe-config
Master skill for generating immunopipe pipeline configurations. Determines pipeline architecture based on data type (scRNA-seq with or without scTCR/BCR-seq) and analysis requirements. Routes to individual proc...
☆ 20查看技能
GitHub
seuratmap2ref
Map query single-cell datasets to high-quality reference atlases using Seurat's reference mapping workflow. Performs label transfer, UMAP projection, and integration with reference annotations without modifying...
☆ 20查看技能
GitHub
research-synthesis
Guide when to use built-in tools (WebFetch, WebSearch) and MCP servers (Parallel Search, Perplexity, Context7) for research. Synthesize findings into narrative for braindump. Use when gathering data, examples,...
☆ 18查看技能
GitHub
hypothesis-testing
Guides scientific hypothesis development and testing methodology. Use when formulating research questions, developing testable hypotheses, designing experiments, or evaluating research approaches. Triggers on p...
☆ 18查看技能
GitHub
ethics
Research ethics, IRB compliance, and data privacy analysis.
☆ 18查看技能
GitHub
research-synthesis
Synthesizes research findings into coherent narratives with uncertainty quantification. Use when integrating findings from multiple sources, creating research summaries, drawing conclusions from evidence, or co...
☆ 18查看技能
GitHub
biologist-analyst
Analyzes living systems and biological phenomena through biological lens using evolution, molecular biology, ecology, and systems biology frameworks. Provides insights on mechanisms, adaptations, interactions,...
☆ 16查看技能
GitHub
dqmc-generate
Create HDF5 simulation files for DQMC with specified physical parameters. Use when setting up new simulations, specifying lattice size, interaction strength U, chemical potential mu, temperature (via dt and L),...
☆ 16查看技能
GitHub
dqmc-run
Execute DQMC Monte Carlo sweeps on HDF5 simulation files. Use when running simulations, checkpointing long runs, using the queue system for multiple files, or checking simulation status.
☆ 16查看技能
GitHub
dqmc-advanced
Advanced DQMC features including unequal-time measurements, analytic continuation, and queue system internals. Use when enabling dynamical correlations, performing MaxEnt continuation, or understanding HDF5 dat...
☆ 16查看技能
GitHub
gemini
Use Gemini AI for research, analysis, summarization, web search, and complex reasoning. Use when you need AI-powered research, code analysis, content summarization, or web search with synthesis.
☆ 16查看技能
GitHub
causal-loop-microsim-generator
This skill generates interactive Causal Loop Diagram (CLD) MicroSims using the vis-network JavaScript library. Use this skill when users need to create causal loop diagrams for systems thinking education, showi...
☆ 14查看技能
GitHub
market-research-and-competitive-analysis
TAM/SAM/SOM calculation, competitor analysis, and market trends identification. Use when analyzing markets, validating business ideas, or entering new markets.
☆ 14查看技能
GitHub
claude-light
Expert assistant for conducting remote experiments with Claude-Light - a web-accessible RGB LED and spectral sensor instrument for statistics, regression, optimization, and design of experiments
☆ 14查看技能
GitHub
vasp
Expert assistant for VASP (Vienna Ab initio Simulation Package) calculations - input file generation, parameter selection, workflow setup, and best practices for accurate DFT calculations
☆ 14查看技能
GitHub
design-of-experiments
Expert guidance for Design of Experiments (DOE) in Python - interactive goal-driven design selection, classical DOE (factorial, response surface, screening), Bayesian optimization with Gaussian processes, model...
☆ 14查看技能
GitHub
materials-databases
Expert assistant for accessing materials databases (AFLOW and Materials Project) - query crystal structures, materials properties, thermodynamic data, and computational results from comprehensive databases
☆ 14查看技能
GitHub
materials-properties
Expert assistant for calculating materials properties from first-principles using ASE - structure relaxation, surface energies, adsorption, reaction barriers, phonons, elastic constants, and thermodynamic model...
☆ 14查看技能
默认按已收录数据中的 GitHub 仓库 Stars 排序。Stars 属于来源仓库，同一仓库的多个技能可能共享相同数值；它反映仓库关注度，不代表单个技能的安装量或质量评分。