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fluidsim
Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when ana...
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biopython
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioin...
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GitHub
rowan
Cloud-based quantum chemistry platform with Python API. Preferred for computational chemistry workflows including pKa prediction, geometry optimization, conformer searching, molecular property calculations, pro...
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GitHub
python-scientific-computing
Python for engineering analysis, numerical computing, and scientific workflows using NumPy, SciPy, SymPy
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GitHub
airalogy-protocol
Expert guide for creating Airalogy Protocols (AIMD), Assigners (Python logic), and Validation Models. Use this to design digital workflows and experiments.
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GitHub
calc-bode
python-controlを使用して、メカニカルシステムの状態空間モデルから伝達関数（Bode Plot）を計算・表示する
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GitHub
scientific-computing
Use when "scientific computing", "astronomy", "astropy", "bioinformatics", "biopython", "symbolic math", "sympy", "statistics", "statsmodels", "scientific Python"
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GitHub
rapidata-use
Use for Rapidata Python SDK tasks: authenticate with RapidataClient, submit labeling orders from datasets (compare/classification/ranking/free-text/locate/draw/select-words/timestamp), apply filters/settings/se...
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compsci-math
Comprehensive computational mathematics toolkit for Claude Code agents. Provides tools for five core domains from MIT's Mathematics for Computer Science curriculum - Proofs (propositions, predicates, induction,...
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GitHub
life-sciences-connector
Query PubMed and scientific databases for protocols, analyze biological data with Biopython, handle HIPAA-compliant data. Use for biology research, protocol searches, sequence analysis, or scientific data handl...
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GitHub
bio-blast
NCBI BLAST sequence similarity search using BioPython. Use when a user wants to run BLAST programmatically with blastn/blastp and retrieve results in JSON format.
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GitHub
python-scitex
Python development for scientific computing and SciTeX projects. Includes testing, debugging, ML practices, and environment management.
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data-analysis
Analyze datasets using Python with pandas, numpy, and visualization libraries. Generates statistical summaries, identifies patterns, creates charts, and provides insights. Use when analyzing CSV/Excel files, ex...
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GitHub
spatialdata
SpatialData framework for handling spatial multi-modal and multi-scale data. Use this skill for questions about spatial omics data analysis, visualization, and the SpatialData Python ecosystem.
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GitHub
envi-pkg-local-improved
ENVI spatial transcriptomics analysis toolkit - comprehensive documentation with tutorials and Python source code
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GitHub
econ-coding
Scientific Python coding for economic research. Use when writing computational economics code, numerical methods, solvers, simulations, or research scripts.
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GitHub
data-analysis
Data analysis workflows and patterns for processing, analyzing, and visualizing data using Python data science libraries.
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GitHub
data-analysis
A skill for analyzing data using Python (pandas) and generating professional visualizations (matplotlib/seaborn).
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