GitHub
atacseq-qc
Performs ATAC-specific biological validation. It calculates metrics unique to chromatin accessibility assays, such as TSS enrichment scores and fragment size distributions (nucleosome banding patterns). Use thi...
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documentation scientific computing AI 技能
发现 documentation scientific computing 相关 Skills，比较来源仓库和用途，查看适合你工作流的技能说明。
分类目录: documentation scientific computing
documentation scientific computing 清除筛选
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GitHub
known-motif-enrichment
This skill should be used when users need to perform known motif enrichment analysis on ChIP-seq, ATAC-seq, or other genomic peak files using HOMER (Hypergeometric Optimization of Motif EnRichment). It identifi...
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GitHub
chipseq-qc
Performs ChIP-specific biological validation. It calculates metrics unique to protein-binding assays, such as Cross-correlation (NSC/RSC) and FRiP. Use this when you have filtered the BAM file and called peaks...
☆ 3查看技能
GitHub
replicates-incorporation
This skill manages experimental reproducibility, pooling, and consensus strategies. This skill operates in two distinct modes based on the input state. (1) Pre-Peak Calling (BAM Mode): It merges all BAMs, gener...
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GitHub
hic-loop-calling
This skill performs chromatin loop detection from Hi-C .mcool files using cooltools.
☆ 3查看技能
GitHub
regulatory-community-analysis-chia-pet
This skill performs protein-mediated regulatory community analysis from ChIA-PET datasets and provide a way for visualizing the communities. Use this skill when you have a annotated peak file (in BED format) fr...
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GitHub
global-methylation-profile
This skill performs genome-wide DNA methylation profiling. It supports single-sample and multi-sample workflows to compute methylation density distributions, genomic feature distribution of the methylation prof...
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GitHub
differential-methylation
This skill performs differential DNA methylation analysis (DMRs and DMCs) between experimental conditions using WGBS methylation tracks (BED/BedGraph). It standardizes input files into per-sample four-column Me...
☆ 3查看技能
GitHub
hic-compartment-shift
This skill performs A/B compartment shift analysis between two Hi-C samples.
☆ 3查看技能
GitHub
track-generation
This skill generates normalized BigWig (.bw) tracks (and/or fold-change tracks) from BAM files for ATAC-seq and ChIP-seq visualization. It handles normalization (RPM or fold-change) and Tn5 offset correction au...
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GitHub
gsdworkflowresearch
Workflow for conducting research
☆ 3查看技能
GitHub
analyzing-research-documents
Extracts high-value insights from research documents, RCAs, design docs, and memos - filters aggressively to return only actionable information. Research equivalent of analyzing-implementations skill.
☆ 3查看技能
GitHub
python-scientific-computing
Python for engineering analysis, numerical computing, and scientific workflows using NumPy, SciPy, SymPy
☆ 3查看技能
GitHub
numpy-numerical-analysis
NumPy for matrix operations, FFT, linear algebra, and numerical computations in marine engineering
☆ 3查看技能
GitHub
trend-modeling
This skill should be used when the user asks to "model trends with limited data", "three-valued logic analysis", "scenario generation", "transitional graphs", "qualitative trend analysis", "uncertain data analy...
☆ 3查看技能
GitHub
trend-analysis
This skill should be used when the user asks to "identify trends", "analyze market trends", "trend forecasting", "macro trends", "micro trends", "emerging patterns", "future projections", "industry trends", or...
☆ 3查看技能
GitHub
time-crystal-scheduling
Time crystal-inspired schedule stability analysis. Use when analyzing schedule churn, detecting natural periodicities, or optimizing for minimal disruption.
☆ 2查看技能
GitHub
research
Get AI-synthesized research on any topic with citations, directly in your terminal. Supports structured JSON output for pipelines. Use when you need comprehensive research grounded in web data without writing c...
☆ 2查看技能
GitHub
comprehensive-research
Multi-phase research orchestration for thorough codebase, documentation, and external knowledge investigation. Invoked by /ai-eng/research command. Use when conducting deep analysis, exploring codebases, invest...
☆ 2查看技能
GitHub
scverse-compact
Compact single-cell analysis patterns with AnnData and Scanpy. Essential patterns for QC, preprocessing, clustering, and visualization.
☆ 2查看技能
GitHub
scverse
Single-cell analysis patterns with AnnData and Scanpy. Use when working with single-cell RNA-seq data, creating or manipulating AnnData objects, performing quality control, normalization, dimensionality reducti...
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GitHub
falcon-deep-research
Execute deep research protocols using the Falcon specialized research framework.
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GitHub
deep-research
Conduct comprehensive, multi-source research on any topic using web search, documentation lookup, and critical analysis. This skill should be used when users request thorough investigation, deep research, or co...
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GitHub
designing-experiments
Interactive guidance for building Sun lab VR experiment configurations using MCP tools and CLI commands. Covers template discovery, experiment configuration generation, and Unity template creation. Use when cre...
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默认按已收录数据中的 GitHub 仓库 Stars 排序。Stars 属于来源仓库，同一仓库的多个技能可能共享相同数值；它反映仓库关注度，不代表单个技能的安装量或质量评分。