chemcrow-tools
A production-grade cheminformatics toolkit for analyzing molecular properties, toxicity, and synthetic accessibility.
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A production-grade cheminformatics toolkit for analyzing molecular properties, toxicity, and synthetic accessibility.
Evaluates medical necessity for procedures like MRI against payer policies, providing approval/denial decisions with justification.
A unified interface for annotating single-cell RNA-seq data using Marker Genes, Deep Learning (CellTypist), or LLMs.
Generates executable Python protocols for Opentrons OT-2 and Flex robots from natural language descriptions.
Analyzes medical images (X-ray, MRI, CT) using multimodal LLMs to identify anomalies and generate reports.
A comprehensive guide and rule set for writing clean, performant, and maintainable React code.
Classifies genetic variants according to ACMG (American College of Medical Genetics) guidelines.
Locate pattern or substring and return position with context. Use to search for specific substring or pattern in a text document
Take a ScienceWorld action in the active session. Returns observation, reward, done. No session_id needed - uses active session from executive_node.
Generate new text or code content from scratch using natural language prompt via LLM. Use to collect thoughts or generate a coherent statement on a topic
Search web using Google CSE. Returns Collection of JSON Notes with fields text, metadata.uri (alias: source_url), metadata.domain, format, char_count
Tests pluck primitive (SELECT single field)
Visible entities within radius R (default/max 7), filtered by view cone and line-of-sight.
Test JSON SQL primitives with search-web output
Evaluate complex text criteria on each item in a Collection and return a new Collection of matching items. Use to identify relevant items in a Collection
Search Obsidian notes using Obsidian Local REST API. Returns Collection of JSON Notes with fields text, metadata.uri (alias: source_url), metadata.domain, format, char_count
Tests filter-structured primitive (WHERE clause)
Fetch all text from URL or base64 PDF. Collection-aware (extracts first item if given Collection). Auto-detects format (PDF/HTML/MD/TXT) and extracts complete text content
Filter Collection by field conditions (SQL WHERE)
Load persistent Note or Collection by ID or name
Perform one frontier-directed exploration episode. Selects farthest reachable position and attempts to reach it via nav primitives.
Attempt exactly ONE adjacent navigation move forward and report the outcome. Atomic navigation operation suitable for composition.
Extract named entities, topics, and relationships from text or structured content
Attempt exactly ONE adjacent climb (+1Y) forward. Atomic navigation operation suitable for composition.
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