GitHub
bio-entrez-link
Find cross-references between NCBI databases using Biopython Bio.Entrez. Use for navigating from genes to proteins, sequences to publications, finding related records, and discovering database relationships.
☆ 299查看技能
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分类目录: 数据库
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GitHub
bio-entrez-fetch
Retrieve records from NCBI databases using Biopython Bio.Entrez. Use for downloading sequences, fetching GenBank records, getting document summaries, and parsing NCBI data into Biopython objects.
☆ 299查看技能
GitHub
bio-entrez-search
Search NCBI databases using Biopython Bio.Entrez. Use for finding records by keyword, building search queries, discovering database structure, and getting global query counts across databases.
☆ 299查看技能
GitHub
bio-geo-data
Query NCBI Gene Expression Omnibus (GEO) for expression datasets using Biopython Bio.Entrez. Use for finding microarray/RNA-seq datasets, downloading expression data, and linking GEO to SRA.
☆ 299查看技能
GitHub
bio-phylo-distance-calculations
Compute evolutionary distances and build phylogenetic trees using Biopython Bio.Phylo.TreeConstruction. Use for creating distance matrices from alignments, building NJ/UPGMA trees, parsimony analysis, and gener...
☆ 299查看技能
GitHub
bio-codon-usage
Analyze codon usage, calculate CAI (Codon Adaptation Index), and examine synonymous codon bias using Biopython. Use when analyzing coding sequences for expression optimization or evolutionary analysis.
☆ 299查看技能
GitHub
bio-fastq-quality
Work with FASTQ quality scores using Biopython. Use when analyzing read quality, filtering by quality, trimming low-quality bases, or generating quality reports.
☆ 299查看技能
GitHub
bio-alignment-pairwise
Perform pairwise sequence alignment using Biopython Bio.Align.PairwiseAligner. Use for comparing two sequences, finding optimal alignments, scoring similarity, and identifying local or global matches between DN...
☆ 299查看技能
GitHub
bio-sequence-statistics
Calculate sequence statistics (N50, length distribution, GC content, summary reports) using Biopython. Use when analyzing sequence datasets, generating QC reports, or comparing assemblies.
☆ 299查看技能
GitHub
bio-restriction-fragment-analysis
Analyze restriction digest fragments using Biopython Bio.Restriction. Predict fragment sizes, get fragment sequences, simulate gel electrophoresis patterns, and perform double digests.
☆ 299查看技能
GitHub
bio-pdb-structure-navigation
Navigate protein structure hierarchy using Biopython Bio.PDB SMCRA model. Use for accessing models, chains, residues, and atoms, iterating over structure levels, extracting sequences, identifying residue types,...
☆ 299查看技能
GitHub
code-review
Review Python code for quality, security, and best practices
☆ 287查看技能
GitHub
test-generator
Generate pytest test cases for Python functions and classes
☆ 287查看技能
GitHub
data-analysis
Comprehensive data analysis skill for CSV files using Python and pandas
☆ 287查看技能
GitHub
setup-env
When given a Python project codebase, this skill helps the agent to set up virtual environments, install dependencies, and run scripts.
☆ 283查看技能
GitHub
temporal-python-testing
Test Temporal workflows with pytest, time-skipping, and mocking strategies. Covers unit testing, integration testing, replay testing, and local development setup. Use when implementing Temporal workflow tests o...
☆ 283查看技能
GitHub
uv-package-manager
Master the uv package manager for fast Python dependency management, virtual environments, and modern Python project workflows. Use when setting up Python projects, managing dependencies, or optimizing Python d...
☆ 283查看技能
GitHub
python-packaging
Automatically applies when configuring Python project packaging. Ensures proper pyproject.toml setup, project layout, build configuration, metadata, and distribution best practices.
☆ 283查看技能
GitHub
image-ocr
Extract text content from images using Tesseract OCR via Python
☆ 283查看技能
GitHub
python-env
Fast Python environment management with uv (10-100x faster than pip). Triggers on: uv, venv, pip, pyproject, python environment, install package, dependencies.
☆ 283查看技能
GitHub
fuzzing-python
Creating fuzz driver for Python libraries using LibFuzzer. This skill is useful when agent needs to work with creating fuzz drivers / fuzz targets for Python project and libraries.
☆ 283查看技能
GitHub
python-json-parsing
Python JSON parsing best practices covering performance optimization (orjson/msgspec), handling large files (streaming/JSONL), security (injection prevention), and advanced querying (JSONPath/JMESPath). Use whe...
☆ 283查看技能
GitHub
transit-least-squares
Transit Least Squares (TLS) algorithm for detecting exoplanet transits in light curves. Use when searching for transiting exoplanets specifically, as TLS is more sensitive than Lomb-Scargle for transit-shaped s...
☆ 283查看技能
GitHub
pypi-server
Guidance for creating Python packages and serving them via a local PyPI server. This skill applies when tasks involve building Python packages (with pyproject.toml or setup.py), setting up local package reposit...
☆ 283查看技能
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默认按已收录数据中的 GitHub 仓库 Stars 排序。Stars 属于来源仓库，同一仓库的多个技能可能共享相同数值；它反映仓库关注度，不代表单个技能的安装量或质量评分。