GitHub
gcell-gene
Gene annotations and TSS analysis using gcell. Use this skill when users ask about: - GENCODE gene annotations - Transcription start sites (TSS) - Gene coordinates and metadata - Transcript information - Queryi...
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databases bioinformatics AI 技能
发现 databases bioinformatics 相关 Skills，比较来源仓库和用途，查看适合你工作流的技能说明。
分类目录: databases bioinformatics
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GitHub
gcell-celltype
Cell type regulatory analysis using gcell. Use this skill when users ask about: - Loading pre-inferred cell types (GET model outputs) - Gene-by-motif matrices showing TF influence on genes - Gene Jacobian analy...
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GitHub
gcell-causal
Causal network analysis using gcell. Use this skill when users ask about: - Inferring causal relationships from expression data - LiNGAM causal discovery algorithm - Regulatory network construction - Visualizin...
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GitHub
gcell-protein
Protein structure and interaction analysis using gcell. Use this skill when users ask about: - Protein sequences from gene names - AlphaFold2 structure predictions and pLDDT scores - UniProt protein information...
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GitHub
sepsis-3-cohort
Identify Sepsis-3 patients in MIMIC-IV using the consensus definition (SOFA >= 2 + suspected infection). Use for sepsis cohort studies, outcome research, or quality metrics.
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GitHub
mimic-eicu-mapping
Map equivalent concepts between MIMIC-IV and eICU databases. Use for multi-database studies, external validation, or understanding structural differences between databases.
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GitHub
subagent-driven-literature-review
Use parallel subagents for large-scale paper screening and deep dive analysis
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GitHub
fiftyone-find-duplicates
Finds duplicate or near-duplicate images in FiftyOne datasets using brain similarity computation. Use when deduplicating datasets, finding similar images, or removing redundant samples.
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GitHub
fiftyone-embeddings-visualization
Visualizes datasets in 2D using embeddings with UMAP or t-SNE dimensionality reduction. Use when exploring dataset structure, finding clusters, identifying outliers, or understanding data distribution.
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GitHub
sampler
Launch and manage D3 (DNA Discrete Diffusion) sampling experiments on SLURM clusters. This skill handles job submission, WandB tracking, and result management for genomic datasets (LentiMPRA, DeepSTARR, Promote...
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GitHub
text-analyst
Computational text analysis for sociology research using R or Python. Guides you through topic models, sentiment analysis, classification, and embeddings with systematic validation. Supports both traditional (L...
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GitHub
structural-biology
Structural biology analysis including protein structure validation, AlphaFold interpretation, and structural comparisons
☆ 10查看技能
GitHub
metabolomics
Metabolomics-specific analysis strategies and domain knowledge
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GitHub
genomics
Genomics and transcriptomics analysis strategies
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GitHub
crispr-design-agent
A specialized tool for designing efficient and specific gRNA sequences for CRISPR-Cas9 experiments.
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GitHub
protein-structure-prediction
Predicts 3D protein structures from amino acid sequences using ESMFold or AlphaFold3 (mock).
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GitHub
crispr-designer
Designs guide RNA (gRNA) sequences for CRISPR-Cas9 editing, including off-target analysis. Use when a user needs to edit a gene or asks for gRNA sequences.
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GitHub
chemcrow-tools
A production-grade cheminformatics toolkit for analyzing molecular properties, toxicity, and synthetic accessibility.
☆ 9查看技能
GitHub
universal-single-cell-annotator
A unified interface for annotating single-cell RNA-seq data using Marker Genes, Deep Learning (CellTypist), or LLMs.
☆ 9查看技能
GitHub
variant-interpretation-acmg
Classifies genetic variants according to ACMG (American College of Medical Genetics) guidelines.
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GitHub
rd-management
R&D management expertise for R&D portfolio management, technology roadmapping, research methodology, patent strategy, lab management, academic partnerships, and regulatory pathways. Use when managing research p...
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GitHub
gene-set-enrichment
Perform gene set enrichment analysis using AI research providers. Analyzes lists of genes to identify biological themes, pathways, and functional associations.
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GitHub
denario
Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing re...
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GitHub
geniml
This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), buil...
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默认按已收录数据中的 GitHub 仓库 Stars 排序。Stars 属于来源仓库，同一仓库的多个技能可能共享相同数值；它反映仓库关注度，不代表单个技能的安装量或质量评分。