GitHub
data-export-excel
Export analysis results, data tables, and formatted spreadsheets to Excel files using openpyxl. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).
☆ 834View skill
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GitHub
data-export-pdf
Create professional PDF reports with text, tables, and embedded images using reportlab. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).
☆ 834View skill
GitHub
bulktrajblend-trajectory-interpolation
Extend scRNA-seq developmental trajectories with BulkTrajBlend by generating intermediate cells from bulk RNA-seq, training beta-VAE and GNN models, and interpolating missing states.
☆ 834View skill
GitHub
bulk-rna-seq-deseq2-analysis-with-omicverse
Walk Claude through PyDESeq2-based differential expression, including ID mapping, DE testing, fold-change thresholding, and enrichment visualisation.
☆ 834View skill
GitHub
bulk-rna-seq-batch-correction-with-combat
Use omicverse's pyComBat wrapper to remove batch effects from merged bulk RNA-seq or microarray cohorts, export corrected matrices, and benchmark pre/post correction visualisations.
☆ 834View skill
GitHub
single-trajectory-analysis
Guide to reproducing OmicVerse trajectory workflows spanning PAGA, Palantir, VIA, velocity coupling, and fate scoring notebooks.
☆ 834View skill
GitHub
tcga-bulk-data-preprocessing-with-omicverse
Guide Claude through ingesting TCGA sample sheets, expression archives, and clinical carts into omicverse, initialising survival metadata, and exporting annotated AnnData files.
☆ 834View skill
GitHub
single-cell-multi-omics-integration
Quick-reference sheet for OmicVerse tutorials spanning MOFA, GLUE pairing, SIMBA integration, TOSICA transfer, and StaVIA cartography.
☆ 834View skill
GitHub
single-cell-preprocessing-with-omicverse
Walk through omicverse's single-cell preprocessing tutorials to QC PBMC3k data, normalise counts, detect HVGs, and run PCA/embedding pipelines on CPU, CPU–GPU mixed, or GPU stacks.
☆ 834View skill
GitHub
data-transform
Transform, clean, reshape, and preprocess data using pandas and numpy. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).
☆ 834View skill
GitHub
single-cell-cellphonedb-communication-mapping
Run omicverse's CellPhoneDB v5 wrapper on annotated single-cell data to infer ligand-receptor networks and produce CellChat-style visualisations.
☆ 834View skill
GitHub
bulk-wgcna-analysis-with-omicverse
Assist Claude in running PyWGCNA through omicverse—preprocessing expression matrices, constructing co-expression modules, visualising eigengenes, and extracting hub genes.
☆ 834View skill
GitHub
data-viz-plots
Create publication-quality plots and visualizations using matplotlib and seaborn. Works with ANY LLM provider (GPT, Gemini, Claude, etc.).
☆ 834View skill
GitHub
single-cell-clustering-and-batch-correction-with-omicverse
Guide Claude through omicverse's single-cell clustering workflow, covering preprocessing, QC, multimethod clustering, topic modeling, cNMF, and cross-batch integration as demonstrated in t_cluster.ipynb and t_s...
☆ 834View skill
GitHub
single-cell-annotation-skills-with-omicverse
Guide Claude through SCSA, MetaTiME, CellVote, CellMatch, GPTAnno, and weighted KNN transfer workflows for annotating single-cell modalities.
☆ 834View skill
GitHub
single-cell-downstream-analysis
Checklist-style reference for OmicVerse downstream tutorials covering AUCell scoring, metacell DEG, and related exports.
☆ 834View skill
GitHub
bench-debug
Debug specific document parsing failures
☆ 831View skill
GitHub
bench
Run benchmark and analyze PDF parsing performance
☆ 831View skill
GitHub
azure-ai-voicelive
Build real-time voice AI applications using Azure AI Voice Live SDK (azure-ai-voicelive). Use this skill when creating Python applications that need real-time bidirectional audio communication with Azure AI, in...
☆ 830View skill
GitHub
azure-ai-search-python
Clean code patterns for Azure AI Search Python SDK (azure-search-documents). Use when building search applications, creating/managing indexes, implementing agentic retrieval with knowledge bases, or working wit...
☆ 830View skill
GitHub
foundry-nextgen-frontend
Build elegant frontend UIs following Microsoft Foundry's NextGen Design System using Vite + React + pnpm + Framer Motion. Use when creating dashboards, agent builders, data grids, entity management interfaces,...
☆ 830View skill
GitHub
github-issue-creator
Convert raw notes, error logs, voice dictation, or screenshots into crisp GitHub-flavored markdown issue reports. Use when the user pastes bug info, error messages, or informal descriptions and wants a structur...
☆ 830View skill
GitHub
openclaw
OpenClaw Skill Manager - Search and install skills from the OpenClaw registry.
☆ 825View skill
GitHub
wp-playground
Test code with WordPress by starting a WordPress server. Use when testing changes to a WordPress plugin, a WordPress theme, WordPress source code, verifying WordPress behavior, or needing a running WordPress in...
☆ 824View skill
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