single-cell-rna-qc

Features and purpose

Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scVerse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering low-quality cells, assessing data quality, or following scVerse/Scanpy best practices for single-cell analysis.

Quick start

Follow the repository instructions for this skill and your agent. Review the files and dependencies before adding it to your workflow.