research
Conduct comprehensive academic research using OpenAlex, PDF extraction, paper search MCPs, and web search. Always produces comprehensive reports with 5+ evidence cards covering conflicting ideas and best approaches. Integrates academic papers (high weight) and non-academic sources (blogs, docs - lower weight but valuable for SOTA). Use when: (1) Researching software architecture patterns, (2) Finding academic papers on technical topics, (3) Conducting literature reviews, (4) Analyzing research papers for evidence-based decisions, (5) Building evidence cards from papers, (6) Finding related works and citations, or (7) When you need grounded, paper-backed technical recommendations. Triggers: research, find papers, literature review, evidence-based, academic research, compare approaches, what does research say, find studies on, search for papers about.
Installation
Follow the repository instructions for this skill and your agent. Review the files and dependencies before adding it to your workflow.
View source ↗GuidesSkill instructions
Research
Comprehensive academic research using OpenAlex, Paper-search, PDF extraction, and web search (Tavily). Always produces 5+ evidence cards covering conflicting ideas with weighted evidence synthesis.
Quick Start
Decision Tree:
- Need evidence-based decision? → Use this skill
-
Quick lookup only? → Use
searchskill instead -
Already researched topic? → Run
ada::research:list
Core Workflow:
Step 0: Gather codebase context (ALWAYS FIRST)
Step 1: Formulate research question
Step 2: Comprehensive discovery (25+ sources)
Step 3: Create 5+ evidence cards incrementally
Critical Evaluation: Assess for codebase context
Step 4: Generate comprehensive report
Mandatory Requirements:
- ✅ Always 5+ evidence cards (broad coverage)
- ✅ Explicitly seek conflicting ideas
- ✅ Weight evidence (academic + real-world sources)
- ✅ Codebase context informs research question
CRITICAL: Write-First Pattern
MANDATORY: After 1-2 tool calls:
- Write/update evidence card immediately
- Update
references.jsonimmediately - SAVE files before next tool calls
- CONTINUE research (writing ≠ stopping)
Why: Context windows are limited. Writing preserves knowledge even if context resets.
Failure Modes:
- ❌ 3+ tool calls before writing → context overload
- ❌ Stopping after one card → must continue until complete
- ❌ Not updating
references.json→ loses tracking
Workflow Summary
Step 0: Codebase Context (ALWAYS FIRST)
Search codebase for: architecture, patterns, technologies, existing implementations. Use context to inform research question.
Step 1: Research Question
- Create
.ada/data/research/{topic}/ - Create
research-question.mdusing template - Create
references.jsonwith intent
Step 2: Discovery (Target: 25+ Sources)
Academic (OpenAlex, Paper-search):
- Foundational:
get_top_cited_works(min_citations: 50+) - Recent SOTA:
search_works(from_year: 2020+) - Citation networks:
get_citation_network
Non-Academic (Tavily via search skill):
- Blogs, docs, case studies in parallel
- Target: 5-10 relevant sources
Conflict-Seeking:
- "{approach A} vs {approach B}"
- "{approach} limitations"
- "alternative to {approach}"
Step 3: Evidence Cards (5+ Required)
- Read 1-2 papers/sources
- Create/update evidence card
- Update
references.json - SAVE files
- REPEAT until 5+ cards
Grouping: Same approach → same card. Different approach → new card.
Critical Evaluation
After 5+ cards, before report:
- Assess strengths/weaknesses
- Evaluate for codebase context
- Compare tradeoffs systematically
- Identify best fit
Step 4: Research Report
- Re-read all evidence cards:
ada::research:show - Re-read
research-question.md - Create
research-report.mdusing template - Include "Answer to Original Question" section
Tools Quick Reference
| Tool | Purpose | When |
|---|---|---|
OpenAlex get_top_cited_works |
Foundational papers | Discovery |
OpenAlex search_works |
Recent SOTA | Discovery |
OpenAlex get_citation_network |
Related work | Deep dive |
Paper-search search_arxiv |
Preprints | Recent work |
PDF read_pdf |
Extract content | Reading papers |
| Tavily (search skill) | Non-academic | Parallel discovery |
zai-zread search_doc |
Semantic issues/PRs/docs | Real-world implementations |
webfetch |
Direct URL reads | Lightweight docs/files |
look_at |
Interpret diagrams/images | PDFs/screenshots |
Research Management Commands
ada::research:status # Full status + next action
ada::research:status --next # Just next action
ada::research:status --checkpoint # Verify state
ada::research:status --ref <name> # Load reference file
ada::research:list # List all sessions
ada::research:show <session> # Show evidence cards
ada::research:cleanup --all # Clear PDFs
Load References On-Demand:
ada::research:status --ref workflow # Workflow guide
ada::research:status --ref evidence-cards # Card guide
ada::research:status --ref template-card # Card template
ada::research:status --ref weighting # Weighting framework
Key Tips (Reminders)
Source Weighting
| Type | Weight | Examples |
|---|---|---|
| Academic (50+ citations) | High | Peer-reviewed papers |
| Academic (10-50 citations) | Medium | Recent SOTA |
| Real-world case studies | High | Company post-mortems |
| Blogs, tutorials | Medium-Low | Expert content |
Evidence Card Essentials
- Key claims with page number citations
- Assumptions and conditions
- Tradeoffs and limitations
- Related/conflicting approaches
- Implementation resources
Common Mistakes
- ❌ Reading 3+ papers before writing → Write after 1-2
- ❌ Not seeking conflicts → Explicitly search opposing views
- ❌ Skipping codebase context → Always start with Step 0
- ❌ Stopping at 3 cards → Must reach 5+ for broad coverage
Directory Structure
.ada/
├── data/research/{topic}/
│ ├── research-question.md
│ ├── evidence-card-*.md
│ ├── research-report.md
│ └── references.json
└── temp/research/downloads/ # Temporary PDFs
References
Templates:
-
references/templates/template-research-question.md -
references/templates/template-evidence-card.md -
references/templates/template-research-report.md -
references/templates/template-references.json
Guides:
-
references/guides/guide-workflow.md- Detailed workflows -
references/guides/guide-evidence-cards.md- Card creation -
references/guides/guide-weighting.md- Source weighting -
references/guides/guide-critical-evaluation.md- Evaluation framework -
references/guides/guide-reports.md- Report generation -
references/guides/guide-adaptive-strategies.md- Handling edge cases
Examples:
-
references/examples/example-evidence-card.md -
references/examples/example-research-report.md -
references/examples/example-workflows.md
Reference:
-
references/reference/reference-tools.md- Complete MCP documentation
Integration
- With search skill: Use Tavily in parallel for non-academic sources
- With docs-write: Use evidence cards for documentation decisions
Examples
Read the usage examples in the source repository.
View source ↗Source history
- Indexed on
- 2026-01-20
- Index updated
- 2026-02-04
- Branch
- main
Index and sync dates describe this directory. View the source repository for code history.
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