anndata

Features and purpose

Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.

Quick start

Follow the repository instructions for this skill and your agent. Review the files and dependencies before adding it to your workflow.