bio-read-qc-umi-processing

Features and purpose

Extract, process, and deduplicate reads using Unique Molecular Identifiers (UMIs) with umi_tools. Use when library prep includes UMIs and accurate molecule counting is needed, such as in single-cell RNA-seq, low-input RNA-seq, or targeted sequencing to distinguish PCR from biological duplicates.

Quick start

Follow the repository instructions for this skill and your agent. Review the files and dependencies before adding it to your workflow.