bio-methylation-calling

Features and purpose

Extract methylation calls from Bismark BAM files using bismark_methylation_extractor. Generates per-cytosine reports for CpG, CHG, and CHH contexts. Use when extracting methylation levels from aligned bisulfite sequencing data for downstream analysis.

Quick start

Follow the repository instructions for this skill and your agent. Review the files and dependencies before adding it to your workflow.