GitHub
takopi-release
Prepare and ship a Takopi release. Use when asked to cut a release, bump release versions, update changelog/spec/readme, tag v, or trigger the GitHub release workflow.
☆ 630View skill
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GitHub
bio-fasta
Read/write FASTA, GenBank, FASTQ files. Sequence manipulation (complement, translate). Indexed random access via faidx. For NGS pipelines (SAM/BAM/VCF), use pysam. For BLAST, use gget or blat-integration.
☆ 626View skill
GitHub
biopython
Primary Python toolkit for molecular biology. Preferred for Python-based PubMed/NCBI queries (Bio.Entrez), sequence manipulation, file parsing (FASTA, GenBank, FASTQ, PDB), advanced BLAST workflows, structures,...
☆ 626View skill
GitHub
hierarchical-models
Patterns for hierarchical/multilevel Bayesian models including random effects, partial pooling, and centered vs non-centered parameterizations.
☆ 626View skill
GitHub
pdb-database
Access RCSB PDB for 3D protein/nucleic acid structures. Search by text/sequence/structure, download coordinates (PDB/mmCIF), retrieve metadata, for structural biology and drug discovery.
☆ 626View skill
GitHub
rdkit
Cheminformatics toolkit for fine-grained molecular control. SMILES/SDF parsing, descriptors (MW, LogP, TPSA), fingerprints, substructure search, 2D/3D generation, similarity, reactions. For standard workflows w...
☆ 626View skill
GitHub
astropy
Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations,...
☆ 626View skill
GitHub
gamma-phase-associator
An overview of the python package for running the GaMMA earthquake phase association algorithm. The algorithm expects phase picks data and station data as input and produces (through unsupervised clustering) ea...
☆ 626View skill
GitHub
seismic-picker-selection
This is a summary the advantages and disadvantages of earthquake event detection and phase picking methods, shared by leading seismology researchers at the 2025 Earthquake Catalog Workshop. Use it when you have...
☆ 626View skill
GitHub
glm-output
Read and process GLM output files. Use when you need to extract temperature data from NetCDF output, convert depth coordinates, or calculate RMSE against observations.
☆ 626View skill
GitHub
obspy-data-api
An overview of the core data API of ObsPy, a Python framework for processing seismological data. It is useful for parsing common seismological file formats, or manipulating custom data into standard objects for...
☆ 626View skill
GitHub
google-calendar-sync
Wizard to set up Google Calendar API integration with service account authentication. Use when setting up calendar sync, Google Calendar API, service accounts, or domain-wide delegation.
☆ 625View skill
GitHub
google-calendar-sync
Wizard to set up Google Calendar API integration with service account authentication and domain-wide delegation
☆ 625View skill
GitHub
write-ios-macos-changelog
Reads commits and changed files within a timeframe specified by user and compiles a changelog for both iOS and macOS.
☆ 625View skill
GitHub
inline-cli
Explain and use the Inline CLI (`inline`) for authentication, chats, users, spaces, messages, search, attachments, downloads, JSON output, and configuration. Use when asked how to use the Inline CLI or its comm...
☆ 625View skill
GitHub
effect-patterns-streams-getting-started
Effect-TS patterns for Streams Getting Started. Use when working with streams getting started in Effect-TS applications.
☆ 623View skill
GitHub
effect-patterns-scheduling
Effect-TS patterns for Scheduling. Use when working with scheduling in Effect-TS applications.
☆ 623View skill
GitHub
effect-patterns-building-data-pipelines
Effect-TS patterns for Building Data Pipelines. Use when working with building data pipelines in Effect-TS applications.
☆ 623View skill
GitHub
effect-patterns-domain-modeling
Effect-TS patterns for Domain Modeling. Use when working with domain modeling in Effect-TS applications.
☆ 623View skill
GitHub
effect-patterns-error-handling-resilience
Effect-TS patterns for Error Handling Resilience. Use when working with error handling resilience in Effect-TS applications.
☆ 623View skill
GitHub
effect-patterns-platform
Effect-TS patterns for Platform. Use when working with platform in Effect-TS applications.
☆ 623View skill
GitHub
effect-patterns-tooling-and-debugging
Effect-TS patterns for Tooling And Debugging. Use when working with tooling and debugging in Effect-TS applications.
☆ 623View skill
GitHub
effect-patterns-resource-management
Effect-TS patterns for Resource Management. Use when working with resource management in Effect-TS applications.
☆ 623View skill
GitHub
effect-patterns-project-setup--execution
Effect-TS patterns for Project Setup Execution. Use when working with project setup execution in Effect-TS applications.
☆ 623View skill
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