GitHub
pyopenms
Python interface to OpenMS for mass spectrometry data analysis. Use for LC-MS/MS proteomics and metabolomics workflows including file handling (mzML, mzXML, mzTab, FASTA, pepXML, protXML, mzIdentML), signal pro...
☆ 9View skill
tools scientific computing AI Skills
Discover tools scientific computing skills, compare source repositories and read the instructions for each workflow.
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GitHub
hypogenic
Automated hypothesis generation and testing using large language models. Use this skill when generating scientific hypotheses from datasets, combining literature insights with empirical data, testing hypotheses...
☆ 9View skill
GitHub
understand
Multi-specialist collaborative analysis to understand how features, functions, or components work
☆ 9View skill
GitHub
biomni
Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical rese...
☆ 9View skill
GitHub
bsee-sodir-extraction
Extract and process energy data from BSEE (Gulf of Mexico) and SODIR (Norway) regulatory databases
☆ 8View skill
GitHub
research
Diagnose research quality and guide systematic query expansion. Use when starting research on any topic, when stuck in research, or when unsure if research is complete.
☆ 7View skill
GitHub
healthsim-membersim
MemberSim generates realistic synthetic claims and payer data for testing claims processing systems, payment integrity, and benefits administration.
☆ 7View skill
GitHub
healthsim-trialsim
Generate realistic clinical trial synthetic data including study definitions, sites, subjects, visits, adverse events, efficacy assessments, and disposition. Use when user requests: clinical trial data, CDISC/S...
☆ 7View skill
GitHub
running-clustering-algorithms
Execute clustering algorithms (K-means, DBSCAN, hierarchical) to identify data groups. Use when requesting "run clustering", "cluster analysis", or "group data points".
☆ 7View skill
GitHub
splitting-datasets
Split datasets into training, validation, and testing sets for ML model development. Use when requesting "split dataset", "train-test split", or "data partitioning".
☆ 7View skill
GitHub
detecting-memory-leaks
Detect potential memory leaks and analyze memory usage patterns in code. Use when troubleshooting performance issues related to memory growth or identifying leak sources. Trigger with phrases like "detect memor...
☆ 7View skill
GitHub
berdl
Query the KBase BERDL (BER Data Lakehouse) pangenome database. Use when the user asks to explore pangenome data, query species information, get genome statistics, analyze gene clusters, or access functional ann...
☆ 7View skill
GitHub
orcaflex-batch-manager
Manage large-scale OrcaFlex batch processing with parallel execution, adaptive worker scaling, memory optimization, and progress tracking for efficient simulation campaigns.
☆ 6View skill
GitHub
gmsh-meshing
Specialized AI agent for finite element mesh generation and manipulation using GMSH. Use for 1D/2D/3D mesh generation, geometry processing, quality assessment, optimization, and integration with OrcaFlex, ANSYS...
☆ 6View skill
GitHub
orcaflex-results-comparison
Compare results across multiple OrcaFlex simulations for design verification, sensitivity studies, and configuration comparison. Includes pretension, stiffness, and force distribution analysis.
☆ 6View skill
GitHub
orcawave-aqwa-benchmark
Cross-validation specialist for comparing OrcaWave and AQWA diffraction analysis results. Provides statistical comparison, peak value validation, and automated benchmark reporting for hydrodynamic coefficient v...
☆ 6View skill
GitHub
orcaflex-post-processing
Post-process OrcaFlex simulation results using OPP (OrcaFlex Post-Process). Use for extracting summary statistics, linked statistics, range graphs, time series, histograms, and generating interactive HTML repor...
☆ 6View skill
GitHub
orcaflex-visualization
Generate visualizations from OrcaFlex simulations including model views, time series plots, range graphs, and interactive HTML reports using Plotly for comprehensive analysis presentation.
☆ 6View skill
GitHub
signal-analysis
Perform signal processing, rainflow cycle counting, and spectral analysis for fatigue and time series data. Use for analyzing stress time histories, computing FFT/PSD, extracting fatigue cycles (ASTM E1049-85),...
☆ 6View skill
GitHub
orcaflex-file-conversion
Convert OrcaFlex files between formats (.dat, .yml, .sim) for digital analysis and automation. Supports bidirectional conversion, batch processing, and format standardization.
☆ 6View skill
GitHub
particles-physics
Physics simulation for particle systems—forces (gravity, wind, drag), attractors/repulsors, velocity fields, turbulence, and collision. Use when particles need realistic or artistic motion, swarm behavior, or f...
☆ 6View skill
GitHub
genetics-and-genomics-expert
Modern genetics expert covering Mendelian genetics, molecular genetics, genomics, and CRISPR technologies
☆ 6View skill
GitHub
ecology-and-evolution-specialist
Expert in evolutionary biology, ecological systems, biodiversity, and conservation
☆ 6View skill
GitHub
numerical-methods-expert
Computational mathematics expert for numerical solutions, approximations, error analysis, and scientific computing
☆ 6View skill
The default order uses GitHub repository stars from our indexed data. Stars belong to the source repository and may be shared by multiple skills. They indicate repository interest, not skill installs or an independent quality score.