GitHub
building-agents-construction
Step-by-step guide for building goal-driven agents. Creates package structure, defines goals, adds nodes, connects edges, and finalizes agent class. Use when actively building an agent.
☆ 8,782View skill
Testing & security AI Skills
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GitHub
building-agents-core
Core concepts for goal-driven agents - architecture, node types, tool discovery, and workflow overview. Use when starting agent development or need to understand agent fundamentals.
☆ 8,777View skill
GitHub
building-agents-patterns
Best practices, patterns, and examples for building goal-driven agents. Includes pause/resume architecture, hybrid workflows, anti-patterns, and handoff to testing. Use when optimizing agent design.
☆ 8,773View skill
GitHub
claude-automation-recommender
Analyze a codebase and recommend Claude Code automations (hooks, subagents, skills, plugins, MCP servers). Use when user asks for automation recommendations, wants to optimize their Claude Code setup, mentions...
☆ 8,757View skill
GitHub
create-plan
Create a concise plan. Use when a user explicitly asks for a plan related to a coding task.
☆ 8,695View skill
GitHub
notion-knowledge-capture
Capture conversations and decisions into structured Notion pages; use when turning chats/notes into wiki entries, how-tos, decisions, or FAQs with proper linking.
☆ 8,695View skill
GitHub
notion-spec-to-implementation
Turn Notion specs into implementation plans, tasks, and progress tracking; use when implementing PRDs/feature specs and creating Notion plans + tasks from them.
☆ 8,695View skill
GitHub
skill-creator
Guide for creating effective skills. This skill should be used when users want to create a new skill (or update an existing skill) that extends Codex's capabilities with specialized knowledge, workflows, or too...
☆ 8,695View skill
GitHub
gh-address-comments
Help address review/issue comments on the open GitHub PR for the current branch using gh CLI; verify gh auth first and prompt the user to authenticate if not logged in.
☆ 8,695View skill
GitHub
skill-installer
Install Codex skills into $CODEX_HOME/skills from a curated list or a GitHub repo path. Use when a user asks to list installable skills, install a curated skill, or install a skill from another repo (including...
☆ 8,695View skill
GitHub
scvi-tools
Deep generative models for single-cell omics. Use when you need probabilistic batch correction (scVI), transfer learning, differential expression with uncertainty, or multi-modal integration (TOTALVI, MultiVI)....
☆ 8,603View skill
GitHub
docx
Document toolkit (.docx). Create/edit documents, tracked changes, comments, formatting preservation, text extraction, for professional document processing.
☆ 8,603View skill
GitHub
qutip
Quantum physics simulation library for open quantum systems. Use when studying master equations, Lindblad dynamics, decoherence, quantum optics, or cavity QED. Best for physics research, open system dynamics, a...
☆ 8,603View skill
GitHub
medchem
Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity metrics, for compound prioritization and library filtering.
☆ 8,603View skill
GitHub
zinc-database
Access ZINC (230M+ purchasable compounds). Search by ZINC ID/SMILES, similarity searches, 3D-ready structures for docking, analog discovery, for virtual screening and drug discovery.
☆ 8,603View skill
GitHub
scikit-learn
Machine learning in Python with scikit-learn. Use when working with supervised learning (classification, regression), unsupervised learning (clustering, dimensionality reduction), model evaluation, hyperparamet...
☆ 8,603View skill
GitHub
transformers
This skill should be used when working with pre-trained transformer models for natural language processing, computer vision, audio, or multimodal tasks. Use for text generation, classification, question answeri...
☆ 8,603View skill
GitHub
xlsx
Spreadsheet toolkit (.xlsx/.csv). Create/edit with formulas/formatting, analyze data, visualization, recalculate formulas, for spreadsheet processing and analysis.
☆ 8,603View skill
GitHub
geniml
This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), buil...
☆ 8,603View skill
GitHub
uspto-database
Access USPTO APIs for patent/trademark searches, examination history (PEDS), assignments, citations, office actions, TSDR, for IP analysis and prior art searches.
☆ 8,603View skill
GitHub
PDF manipulation toolkit. Extract text/tables, create PDFs, merge/split, fill forms, for programmatic document processing and analysis.
☆ 8,603View skill
GitHub
gene-database
Query NCBI Gene via E-utilities/Datasets API. Search by symbol/ID, retrieve gene info (RefSeqs, GO, locations, phenotypes), batch lookups, for gene annotation and functional analysis.
☆ 8,603View skill
GitHub
torch-geometric
Graph Neural Networks (PyG). Node/graph classification, link prediction, GCN, GAT, GraphSAGE, heterogeneous graphs, molecular property prediction, for geometric deep learning.
☆ 8,603View skill
GitHub
pymc-bayesian-modeling
Bayesian modeling with PyMC. Build hierarchical models, MCMC (NUTS), variational inference, LOO/WAIC comparison, posterior checks, for probabilistic programming and inference.
☆ 8,603View skill
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