GitHub
gget
Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST searches, AlphaFold structures, enrichment analysis. Best for interactive exploration, simple queries. For batch...
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Search results for “Python”
Skills matching the name, description or GitHub author.
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pubmed-database
Direct REST API access to PubMed. Advanced Boolean/MeSH queries, E-utilities API, batch processing, citation management. For Python workflows, prefer biopython (Bio.Entrez). Use this for direct HTTP/REST work o...
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GitHub
omero-integration
Microscopy data management platform. Access images via Python, retrieve datasets, analyze pixels, manage ROIs/annotations, batch processing, for high-content screening and microscopy workflows.
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GitHub
uniprot-database
Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workflows with multiple databases, prefer bioservices (unified interface to 40+ services). Use thi...
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GitHub
fluidsim
Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when ana...
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GitHub
sympy
Use this skill when working with symbolic mathematics in Python. This skill should be used for symbolic computation tasks including solving equations algebraically, performing calculus operations (derivatives,...
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GitHub
biopython
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioin...
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GitHub
rowan
Cloud-based quantum chemistry platform with Python API. Preferred for computational chemistry workflows including pKa prediction, geometry optimization, conformer searching, molecular property calculations, pro...
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GitHub
python
Guidelines when creating, reading, updating, or deleting Python code
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GitHub
python-example
Example Python skill demonstrating the SDK decorator pattern
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GitHub
pop-worktree-manager
Python-based git worktree manager with 8 operations: list, create, remove, switch, update-all, prune, init, analyze. Handles cross-platform paths, STATUS.json integration, protected branch safety. Use this skil...
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GitHub
cheatsheets
Quick reference cheatsheets for Kailash SDK patterns, nodes, workflows, and best practices. Use when asking about 'quick tips', 'cheat sheet', 'quick reference', 'common mistakes', 'node selection', 'workflow p...
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GitHub
core-sdk
Kailash Core SDK fundamentals including workflow creation, node patterns, connections, runtime execution, parameter passing, error handling, cyclic workflows, async patterns, MCP integration, and installation....
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GitHub
secure-container-build
Build secure container images with Wolfi runtime, non-root users, and multi-stage builds. Templates for Python/uv, Bun, Node.js/pnpm, Golang (static/CGO), and Rust (glibc/musl) with allocator optimization
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GitHub
browser-automation
Local Python-based browser automation toolkit using Playwright. Provides command-line tools for navigating, interacting with, and testing web applications. Supports clicking, typing, hovering, screenshots, cont...
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GitHub
python-standards
Modern Python development with uv, ruff, mypy, and pytest. Use when: - Writing or reviewing Python code - Setting up Python projects or pyproject.toml - Choosing dependency management (uv, poetry, pip) - Config...
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GitHub
python-cli
Universal Python CLI development patterns and best practices
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GitHub
python-guidelines
Universal Python development guidelines and best practices
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GitHub
python-standards
Python code quality standards (PEP 8, type hints, docstrings). Use when writing Python code.
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GitHub
lseg-data
This skill should be used when the user asks to "access LSEG data", "query Refinitiv", "get market data from Refinitiv", "download fundamentals from LSEG", "access ESG scores", "convert RIC to ISIN", or needs t...
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GitHub
marimo
This skill should be used when the user asks to "use marimo", "create a marimo notebook", "debug a marimo notebook", "inspect cells", "understand reactive execution", "fix marimo errors", "convert from jupyter...
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GitHub
code-style-checker
Checks python code for use of print statements and suggests using logging instead. Use this when the user asks to review code or check for bad practices.
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GitHub
mcp-builder
Build MCP (Model Context Protocol) servers for Claude Code integration. Use when creating tools, resources, or prompts that extend Claude's capabilities. Supports Python FastMCP and TypeScript implementations.
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GitHub
python-development
Python開発ガイド。FastAPI、Django、Flask、型ヒント、非同期処理、データ処理、パフォーマンス最適化など、Pythonアプリケーション開発のベストプラクティス。
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