Discover documentation scientific computing skills, compare source repositories and read the instructions for each workflow.
Generate clinical trial protocols for medical devices or drugs. This skill should be used when users say "Create a clinical trial protocol", "Generate protocol for [device/drug]", "Help me design a clinical stu...
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering lo...
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS sys...
Plan user research studies - method selection, participant recruitment, study design, and research questions for generative and evaluative research.
Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical rese...
Research-driven investigation skill for validating solutions and exploring documentation. Never ask questions you can answer yourself through research. Use WebFetch, WebSearch, and testing to validate ideas bef...
Deep research and information gathering skill for comprehensive topic analysis
Systematic approach for gathering authoritative, version-accurate documentation. Claude invokes this skill when research is needed before implementation. Ensures truth over speed while achieving both.
How to handle Unmodelled Density Blobs
Research topics by verifying actual source content. Use when asked to research or study links and documentation.
Patterns for data loading, exploration, and statistical analysis
Patterns for data loading, exploration, and statistical analysis
Best practices for designing reproducible experiments
Best practices for designing reproducible experiments
Comprehensive collection of 128+ ready-to-use scientific skills for Claude enabling research across biology, chemistry, medicine, genomics, and advanced analysis domains.
This skill should be used when the user asks to "create a packmol input", "pack molecules with packmol", "solvate a protein", "build an initial configuration", "setup molecular dynamics", or discusses molecular...
Visualize datasets in 2D using embeddings with UMAP or t-SNE dimensionality reduction. Use when users want to explore dataset structure, find clusters in images, identify outliers, color samples by class or met...
Set up and execute phylogenetic biogeographic analyses using BioGeoBEARS in R. Use when users request biogeographic reconstruction, ancestral range estimation, or want to analyze species distributions on phylog...
Generate phylogenies from genome assemblies using BUSCO/compleasm-based single-copy orthologs with scheduler-aware workflow generation
A skill for analyzing data using Python (pandas) and generating professional visualizations (matplotlib/seaborn).
Research workflow patterns specific to {project}. Covers research agent coordination, source management, and synthesis strategies.
Conduct enterprise-grade research with multi-source synthesis, citation tracking, and verification. Use when user needs comprehensive analysis requiring 10+ sources, verified claims, or comparison of approaches...
Analyze datasets and create visualizations
First principles analysis. USE WHEN first principles, fundamental, root cause, decompose. SkillSearch('firstprinciples') for docs.
The default order uses GitHub repository stars from our indexed data. Stars belong to the source repository and may be shared by multiple skills. They indicate repository interest, not skill installs or an independent quality score.