GitHub
m4-api
Use the M4 Python API to query clinical datasets (MIMIC-IV, eICU) programmatically. Triggers on "M4 API", "query MIMIC with Python", "clinical data analysis", "EHR data", "execute SQL on MIMIC", or when writing...
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GitHub
mimic-eicu-mapping
Map equivalent concepts between MIMIC-IV and eICU databases. Use for multi-database studies, external validation, or understanding structural differences between databases.
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GitHub
sirs-criteria
Calculate SIRS (Systemic Inflammatory Response Syndrome) criteria for ICU patients in MIMIC-IV. Use for historical sepsis definitions, inflammatory response assessment, or research comparing SIRS vs Sepsis-3.
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GitHub
r3f-best-practices
React Three Fiber (R3F) and Poimandres ecosystem best practices. Use when writing, reviewing, or optimizing R3F code. Triggers on tasks involving @react-three/fiber, @react-three/drei, zustand, @react-three/pos...
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GitHub
three-best-practices
Three.js performance optimization and best practices guidelines. Use when writing, reviewing, or optimizing Three.js code. Triggers on tasks involving 3D scenes, WebGL/WebGPU rendering, geometries, materials, t...
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GitHub
data-visualization
Master advanced declarative visualization with HoloViews. Use this skill when creating complex multi-dimensional visualizations, composing overlays and layouts, implementing interactive streams and selection, b...
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GitHub
colormaps-styling
Master color management and visual styling with Colorcet. Use this skill when selecting appropriate colormaps, creating accessible and colorblind-friendly visualizations, applying consistent themes, or customiz...
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GitHub
panel-dashboards
Master interactive dashboard and application development with Panel and Param. Use this skill when building custom web applications with Python, creating reactive component-based UIs, handling file uploads and...
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GitHub
code-quality-tools
Configure and use automated code quality tools (ruff, mypy, pre-commit) for scientific Python projects. Use when setting up linting, formatting, type checking, or automated quality gates. Ideal for enforcing co...
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GitHub
advanced-rendering
Master high-performance rendering for large datasets with Datashader. Use this skill when working with datasets exceeding 100M+ points, optimizing visualization performance, or implementing efficient rendering...
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GitHub
xarray-for-multidimensional-data
Work with labeled multidimensional arrays for scientific data analysis using Xarray. Use when handling climate data, satellite imagery, oceanographic data, or any multidimensional datasets with coordinates and...
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GitHub
python-testing
Write and organize tests for scientific Python packages using pytest following Scientific Python community best practices. Use when setting up test suites, writing unit tests, integration tests, testing numeric...
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GitHub
pixi-package-manager
Manage scientific Python dependencies and environments using pixi package manager with unified conda-forge and PyPI support. Use when setting up project environments, managing dependencies, creating reproducibl...
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GitHub
python-packaging
Create and publish distributable scientific Python packages following Scientific Python community best practices with pyproject.toml, src layout, and Hatchling. Use when building Python libraries, publishing to...
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GitHub
parameterization
Master declarative parameter systems with Param for type-safe configuration. Use this skill when building parameterized classes with automatic validation, creating reactive dependencies with @param.depends, imp...
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GitHub
scientific-documentation
This skill should be used when the user asks to "set up documentation", "create docs for Python package", "configure Sphinx", "set up MkDocs", "write docstrings", "use NumPy-style docstrings", "set up Read the...
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GitHub
lumen-ai
Master AI-powered natural language data exploration with Lumen AI. Use this skill when building conversational data analysis interfaces, enabling natural language queries to databases, creating custom AI agents...
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GitHub
lumen-dashboards
Master declarative, no-code data dashboards with Lumen YAML specifications. Use this skill when building standard data exploration dashboards, connecting multiple data sources (files, databases, APIs), creating...
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GitHub
astropy-fundamentals
Work with astronomical data using Astropy for FITS file I/O, coordinate transformations, physical units, precise time handling, and catalog operations. Use when processing telescope images, matching celestial c...
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GitHub
plotting-fundamentals
Master quick plotting and interactive visualization with hvPlot. Use this skill when creating basic plots (line, scatter, bar, histogram, box), visualizing pandas DataFrames with minimal code, adding interactiv...
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GitHub
geospatial-visualization
Master geographic and mapping visualizations with GeoViews. Use this skill when creating interactive maps, visualizing point/polygon/line geographic data, building choropleth maps, performing spatial analysis (...
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GitHub
commitmsg
Generate a concise commit message by analyzing git diff changes
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GitHub
data-analysis
Analyze datasets to extract insights, identify patterns, and generate reports. Use when exploring data, creating visualizations, or performing statistical analysis. Handles CSV, JSON, SQL queries, and Python pa...
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GitHub
git-workflow
Manage Git workflows including commits, branches, merges, and collaboration. Use when working with Git repositories, creating commits, managing branches, or resolving conflicts.
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