GitHub
python-linting
This skill helps lint Python code using ruff. Use when the user asks to "lint", "check code quality", or "fix style issues".
☆ 476View skill
Search results for “Python”
Skills matching the name, description or GitHub author.
Categories: Databases
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scientific-schematics
Create publication-quality scientific diagrams, flowcharts, and schematics using Python (graphviz, matplotlib, schemdraw, networkx). Specialized in neural network architectures, system diagrams, and flowcharts....
☆ 441View skill
GitHub
python-standards
Apply Python tooling standards including uv package management, pytest testing, ruff/basedpyright code quality, one-line docstrings, and self-documenting code practices. Use this skill when working with Python...
☆ 438View skill
GitHub
code-consistency-logging-standards
Check Python logging levels and patterns for correctness. Focus on identifying wrong severity levels and missing exception handling. Use when reviewing code quality.
☆ 391View skill
GitHub
reverse-engineering-api
Reverse engineer web APIs by capturing browser traffic (HAR files) and generating production-ready Python API clients. Use when the user wants to create an API client for a website, automate web interactions, o...
☆ 389View skill
GitHub
code-execution
Execute Python code locally with marketplace API access for 90%+ token savings on bulk operations. Activates when user requests bulk operations (10+ files), complex multi-step workflows, iterative processing, o...
☆ 350View skill
GitHub
rlm
Run a Recursive Language Model-style loop for long-context tasks. Uses a persistent local Python REPL and an rlm-subcall subagent as the sub-LLM (llm_query).
☆ 319View skill
GitHub
business-document-generator
This skill should be used when the user requests to create professional business documents (proposals, business plans, or budgets) from templates. It provides PDF templates and a Python script for generating fi...
☆ 313View skill
GitHub
python-pro
Use when building Python 3.11+ applications requiring type safety, async programming, or production-grade patterns. Invoke for type hints, pytest, async/await, dataclasses, mypy configuration.
☆ 312View skill
GitHub
fastapi-expert
Use when building high-performance async Python APIs with FastAPI and Pydantic V2. Invoke for async SQLAlchemy, JWT authentication, WebSockets, OpenAPI documentation.
☆ 312View skill
GitHub
mcp-developer
Use when building MCP servers or clients that connect AI systems with external tools and data sources. Invoke for MCP protocol compliance, TypeScript/Python SDKs, resource providers, tool functions.
☆ 312View skill
GitHub
honcho-integration
Integrate Honcho memory and social cognition into existing Python or TypeScript codebases. Use when adding Honcho SDK, setting up peers, configuring sessions, or implementing the dialectic chat endpoint for AI...
☆ 311View skill
GitHub
mcp-builder
Guide for creating high-quality MCP (Model Context Protocol) servers that enable LLMs to interact with external services through well-designed tools. Use when building MCP servers to integrate external APIs or...
☆ 310View skill
GitHub
bio-transcription-translation
Transcribe DNA to RNA and translate to protein using Biopython. Use when converting between DNA, RNA, and protein sequences, finding ORFs, or using alternative codon tables.
☆ 300View skill
GitHub
bio-alignment-msa-parsing
Parse and analyze multiple sequence alignments using Biopython. Extract sequences, identify conserved regions, analyze gaps, work with annotations, and manipulate alignment data for downstream analysis.
☆ 300View skill
GitHub
bio-single-cell-data-io
Read, write, and create single-cell data objects using Seurat (R) and Scanpy (Python). Use for loading 10X Genomics data, importing/exporting h5ad and RDS files, creating Seurat objects and AnnData objects, and...
☆ 300View skill
GitHub
bio-single-cell-clustering
Dimensionality reduction and clustering for single-cell RNA-seq using Seurat (R) and Scanpy (Python). Use for running PCA, computing neighbors, clustering with Leiden/Louvain algorithms, generating UMAP/tSNE em...
☆ 300View skill
GitHub
bio-restriction-mapping
Create restriction maps showing enzyme cut positions on DNA sequences using Biopython Bio.Restriction. Visualize cut sites, calculate distances between sites, and generate text or graphical maps.
☆ 300View skill
GitHub
bio-blast-searches
Run remote BLAST searches against NCBI databases using Biopython Bio.Blast. Use for sequence similarity searches, identifying unknown sequences, finding homologs, and querying NCBI's nr/nt databases.
☆ 300View skill
GitHub
bio-population-genetics-scikit-allel-analysis
Python population genetics with scikit-allel. Read VCF files, compute allele frequencies, calculate diversity statistics, perform PCA, and run selection scans using GenotypeArray and HaplotypeArray data structu...
☆ 300View skill
GitHub
bio-pdb-geometric-analysis
Perform geometric calculations on protein structures using Biopython Bio.PDB. Use for measuring distances, angles, and dihedrals, finding neighbor atoms, superimposing structures, calculating RMSD, identifying...
☆ 300View skill
GitHub
bio-sequence-properties
Calculate sequence properties like GC content, molecular weight, isoelectric point, and GC skew using Biopython. Use when analyzing sequence composition, computing physical properties, or comparing sequences.
☆ 300View skill
GitHub
bio-motif-search
Find patterns, motifs, and subsequences in biological sequences using Biopython. Use when searching for transcription factor binding sites, regulatory elements, or any sequence pattern. For restriction enzyme a...
☆ 300View skill
GitHub
bio-pdb-structure-modification
Modify protein structures using Biopython Bio.PDB. Use for transforming coordinates, removing atoms or residues, adding new entities, modifying B-factors and occupancies, renumbering residues, and building stru...
☆ 300View skill
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