GitHub
sapsii-score
Calculate SAPS-II (Simplified Acute Physiology Score II) for ICU patients in MIMIC-IV. Use for mortality prediction, severity assessment, or international ICU benchmarking.
☆ 12View skill
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GitHub
vasopressor-equivalents
Calculate norepinephrine-equivalent dose for vasopressor comparison in MIMIC-IV. Use for hemodynamic support quantification, shock severity assessment, or vasopressor weaning studies.
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GitHub
lods-score
Calculate LODS (Logistic Organ Dysfunction Score) for ICU patients in MIMIC-IV. Use for organ dysfunction assessment across 6 systems with weighted scoring.
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GitHub
apsiii-score
Calculate APACHE III (Acute Physiology Score III) for ICU patients in MIMIC-IV. Use for mortality prediction, severity stratification, case-mix adjustment, or risk-adjusted outcome comparisons.
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GitHub
sepsis-3-cohort
Identify Sepsis-3 patients in MIMIC-IV using the consensus definition (SOFA >= 2 + suspected infection). Use for sepsis cohort studies, outcome research, or quality metrics.
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GitHub
gcs-calculation
Extract and calculate Glasgow Coma Scale (GCS) for ICU patients in MIMIC-IV. Use for neurological assessment, consciousness monitoring, or trauma severity scoring.
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GitHub
m4-research
Start a structured clinical research session. Triggers on "/research", "start research", "new study", "analyze cohort", "investigate hypothesis", "research question", or when users describe clinical research go...
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GitHub
sofa-score
Calculate SOFA (Sequential Organ Failure Assessment) score for ICU patients in MIMIC-IV. Use for sepsis severity assessment, organ dysfunction quantification, mortality prediction, or Sepsis-3 criteria evaluati...
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GitHub
first-icu-stay
Identify first ICU stays and first hospital admissions in MIMIC-IV for cohort selection. Use to exclude readmissions, create independent observations, or build adult patient cohorts.
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GitHub
oasis-score
Calculate OASIS (Oxford Acute Severity of Illness Score) for ICU patients in MIMIC-IV. Use for mortality prediction with fewer variables than APACHE/SAPS, or when lab data is limited.
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GitHub
clinical-research-pitfalls
Avoid common methodological mistakes in clinical research with MIMIC-IV and eICU databases. Covers immortal time bias, information leakage, selection bias, and other critical pitfalls.
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GitHub
mimic-table-relationships
Understand MIMIC-IV table relationships, join patterns, and identifier hierarchy. Use for correct data linkage, avoiding duplicates, and proper temporal joins.
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GitHub
kdigo-aki-staging
Calculate KDIGO AKI (Acute Kidney Injury) staging for ICU patients in MIMIC-IV using creatinine and urine output criteria. Use for nephrology research, AKI outcome studies, or renal function monitoring.
☆ 12View skill
GitHub
baseline-creatinine
Estimate baseline serum creatinine for AKI assessment in MIMIC-IV. Use for KDIGO staging, AKI research, or renal function baseline establishment.
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GitHub
suspicion-of-infection
Identify suspected infection events in MIMIC-IV using antibiotic administration plus culture timing. Use as a component of Sepsis-3 definition or for infection research.
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GitHub
m4-api
Use the M4 Python API to query clinical datasets (MIMIC-IV, eICU) programmatically. Triggers on "M4 API", "query MIMIC with Python", "clinical data analysis", "EHR data", "execute SQL on MIMIC", or when writing...
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GitHub
mimic-eicu-mapping
Map equivalent concepts between MIMIC-IV and eICU databases. Use for multi-database studies, external validation, or understanding structural differences between databases.
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GitHub
sirs-criteria
Calculate SIRS (Systemic Inflammatory Response Syndrome) criteria for ICU patients in MIMIC-IV. Use for historical sepsis definitions, inflammatory response assessment, or research comparing SIRS vs Sepsis-3.
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GitHub
r3f-best-practices
React Three Fiber (R3F) and Poimandres ecosystem best practices. Use when writing, reviewing, or optimizing R3F code. Triggers on tasks involving @react-three/fiber, @react-three/drei, zustand, @react-three/pos...
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GitHub
three-best-practices
Three.js performance optimization and best practices guidelines. Use when writing, reviewing, or optimizing Three.js code. Triggers on tasks involving 3D scenes, WebGL/WebGPU rendering, geometries, materials, t...
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GitHub
data-visualization
Master advanced declarative visualization with HoloViews. Use this skill when creating complex multi-dimensional visualizations, composing overlays and layouts, implementing interactive streams and selection, b...
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GitHub
colormaps-styling
Master color management and visual styling with Colorcet. Use this skill when selecting appropriate colormaps, creating accessible and colorblind-friendly visualizations, applying consistent themes, or customiz...
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GitHub
panel-dashboards
Master interactive dashboard and application development with Panel and Param. Use this skill when building custom web applications with Python, creating reactive component-based UIs, handling file uploads and...
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GitHub
code-quality-tools
Configure and use automated code quality tools (ruff, mypy, pre-commit) for scientific Python projects. Use when setting up linting, formatting, type checking, or automated quality gates. Ideal for enforcing co...
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