research-pipeline-runner
Run this repo’s Units+Checkpoints research pipelines end-to-end (survey/综述/review/调研/教程/系统综述/审稿), with workspaces + checkpoints. **Trigger**: run pipeline, kickoff, 继续执行, 自动跑, 写一篇, survey/...
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Run this repo’s Units+Checkpoints research pipelines end-to-end (survey/综述/review/调研/教程/系统综述/审稿), with workspaces + checkpoints. **Trigger**: run pipeline, kickoff, 继续执行, 自动跑, 写一篇, survey/...
Synthesize evidence into a structured narrative (`output/SYNTHESIS.md`) grounded in `papers/extraction_table.csv`, including limitations and bias considerations. **Trigger**: synthesis, evidence synthesis, syst...
Build a concept graph (nodes + prerequisite edges) from a tutorial spec, saving as `outline/concept_graph.yml`. **Trigger**: concept graph, prerequisite graph, dependency graph, 概念图, 先修关系. **Use when**:...
Identify survey/review papers in a retrieved set and extract taxonomy seeds into `outline/taxonomy.yml` (topics/subtopics/terminology). **Trigger**: survey seed harvest, taxonomy seeds, 从 survey 提 taxonomy, b...
Extract per-subsection “anchor facts” (NO PROSE) from evidence packs so the writer is forced to include concrete numbers/benchmarks/limitations instead of generic summaries. **Trigger**: anchor sheet, anchor fa...
Convert a taxonomy (`outline/taxonomy.yml`) into a bullet-only outline (`outline/outline.yml`) with sections/subsections. **Trigger**: outline builder, bullet outline, outline.yml, 大纲生成, bullets-only. **Use...
Write a systematic review protocol into `output/PROTOCOL.md` (databases, queries, inclusion/exclusion, time window, extraction fields). **Trigger**: protocol, PRISMA, systematic review, inclusion/exclusion, 检...
Download a small corpus of open-access arXiv survey/review PDFs about LLM agents and extract text for style learning. **Trigger**: agent survey corpus, ref corpus, download surveys, 学习综述写法, 下载 survey. *...
Generate lightweight section/subsection transitions (NO NEW FACTS) to prevent “island” subsections; outputs a transition map that merging/writing can weave in. **Trigger**: transition weaver, weave transitions,...
Rewrite `outline/claim_evidence_matrix.md` as a projection/index of evidence packs (NO PROSE), so claims/axes are driven by `outline/evidence_drafts.jsonl` rather than outline placeholders. **Trigger**: claim m...
Normalize cross-skill JSONL interfaces (ids + titles + citation key formats) so downstream skills do not rely on best-effort joins. **Trigger**: schema normalize, jsonl contract, interface drift, join drift, 字...
Retrieve paper metadata from arXiv using keyword queries and save results as JSONL (`papers/papers_raw.jsonl`). **Trigger**: arXiv, arxiv, paper search, metadata retrieval, 文献检索, 论文检索, 拉取元数据, 离线...
Manage title/abstract screening and record decisions into `papers/screening_log.csv` according to an approved protocol. **Trigger**: screening, title/abstract screening, inclusion/exclusion, screening_log.csv,...
Audit the evidence supporting each claim and write gaps/concerns into `output/MISSING_EVIDENCE.md`. **Trigger**: evidence audit, missing evidence, unsupported claims, 审稿证据审计, 证据缺口. **Use when**: peer...
Normalize terminology across a draft (canonical terms + synonym policy) without changing citations or meaning. **Trigger**: terminology, glossary, consistent terms, 术语统一, 统一叫法, 术语表. **Use when**: the...
Audit the workspace against the pipeline artifact contract (DONE outputs + pipeline target_artifacts). Writes `output/CONTRACT_REPORT.md`. **Trigger**: contract audit, artifact contract, missing artifacts, targ...
Multi-route literature expansion + metadata normalization for evidence-first surveys. Produces a large candidate pool (`papers/papers_raw.jsonl`, target ≥200) with stable IDs and provenance, ready for dedupe/ra...
Audit-style editing pass for `output/DRAFT.md`: remove template boilerplate, improve coherence, and enforce citation anchoring. **Trigger**: polish draft, de-template, coherence pass, remove boilerplate, 润色,...
Download PDFs (when available) and extract plain text to support full-text evidence, writing `papers/fulltext_index.jsonl` and `papers/fulltext/*.txt`. **Trigger**: PDF download, fulltext, extract text, papers/...
Audit/regression checks for the evidence-first survey pipeline: citation health, per-section coverage, placeholder leakage, and template repetition. **Trigger**: auditor, audit, regression test, quality report,...
Define tutorial scope, target audience, prerequisites, learning objectives, and a running example; output a tutorial spec for downstream planning. **Trigger**: tutorial spec, scope, audience, prerequisites, lea...
Map papers from the core set to each outline subsection and write `outline/mapping.tsv` with coverage tracking. **Trigger**: section mapper, mapping.tsv, coverage, paper-to-section mapping, 论文映射, 覆盖率. **...
Build per-subsection writing briefs (NO PROSE) so later drafting is driven by evidence and checkable comparison axes (not outline placeholders). **Trigger**: subsection briefs, writing cards, intent cards, H3 b...
Initialize a new workspace by copying the standard artifact template (STATUS.md, CHECKPOINTS.md, UNITS.csv, DECISIONS.md + folders). **Trigger**: workspace init, initialize workspace, workspace template, 初始化...
The default order uses GitHub repository stars from our indexed data. Stars belong to the source repository and may be shared by multiple skills. They indicate repository interest, not skill installs or an independent quality score.