GitHub
pubchem-database
Query PubChem via PUG-REST API/PubChemPy (110M+ compounds). Search by name/CID/SMILES, retrieve properties, similarity/substructure searches, bioactivity, for cheminformatics.
☆ 283View skill
blockchain scientific computing AI Skills
Discover blockchain scientific computing skills, compare source repositories and read the instructions for each workflow.
Categories: blockchain scientific computing
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GitHub
pycse
Python computations in science and engineering (pycse) - helps with scientific computing tasks including nonlinear regression, uncertainty quantification, design of experiments (DOE), Latin hypercube sampling,...
☆ 272View skill
GitHub
virus-monitor
Virus-Monitoring für Wien (Abwasser + Sentinel)
☆ 230View skill
GitHub
gemini-deep-research
Perform complex, long-running research tasks using Gemini Deep Research Agent. Use when asked to research topics requiring multi-source synthesis, competitive analysis, market research, or comprehensive technic...
☆ 229View skill
GitHub
nextflow-development
Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core,...
☆ 210View skill
GitHub
scientific-problem-selection
This skill should be used when scientists need help with research problem selection, project ideation, troubleshooting stuck projects, or strategic scientific decisions. Use this skill when users ask to pitch a...
☆ 210View skill
GitHub
clinical-trial-protocol-skill
Generate clinical trial protocols for medical devices or drugs. This skill should be used when users say "Create a clinical trial protocol", "Generate protocol for [device/drug]", "Help me design a clinical stu...
☆ 210View skill
GitHub
single-cell-rna-qc
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering lo...
☆ 210View skill
GitHub
instrument-data-to-allotrope
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS sys...
☆ 210View skill
GitHub
user-research-planning
Plan user research studies - method selection, participant recruitment, study design, and research questions for generative and evaluative research.
☆ 208View skill
GitHub
independent-research
Research-driven investigation skill for validating solutions and exploring documentation. Never ask questions you can answer yourself through research. Use WebFetch, WebSearch, and testing to validate ideas bef...
☆ 190View skill
GitHub
research
Deep research and information gathering skill for comprehensive topic analysis
☆ 184View skill
GitHub
research-methodology
Systematic approach for gathering authoritative, version-accurate documentation. Claude invokes this skill when research is needed before implementation. Ensures truth over speed while achieving both.
☆ 156View skill
GitHub
coot-unmodelled-blobs
How to handle Unmodelled Density Blobs
☆ 154View skill
GitHub
research
Research topics by verifying actual source content. Use when asked to research or study links and documentation.
☆ 153View skill
GitHub
data-analysis
Patterns for data loading, exploration, and statistical analysis
☆ 141View skill
GitHub
data-analysis
Patterns for data loading, exploration, and statistical analysis
☆ 141View skill
GitHub
experiment-design
Best practices for designing reproducible experiments
☆ 141View skill
GitHub
experiment-design
Best practices for designing reproducible experiments
☆ 141View skill
GitHub
claude-scientific-skills
Comprehensive collection of 128+ ready-to-use scientific skills for Claude enabling research across biology, chemistry, medicine, genomics, and advanced analysis domains.
☆ 129View skill
GitHub
fiftyone-embeddings-visualization
Visualize datasets in 2D using embeddings with UMAP or t-SNE dimensionality reduction. Use when users want to explore dataset structure, find clusters in images, identify outliers, color samples by class or met...
☆ 124View skill
GitHub
project-research
Research workflow patterns specific to {project}. Covers research agent coordination, source management, and synthesis strategies.
☆ 122View skill
GitHub
data-analysis
Analyze datasets and create visualizations
☆ 118View skill
GitHub
firstprinciples
First principles analysis. USE WHEN first principles, fundamental, root cause, decompose. SkillSearch('firstprinciples') for docs.
☆ 99View skill
The default order uses GitHub repository stars from our indexed data. Stars belong to the source repository and may be shared by multiple skills. They indicate repository interest, not skill installs or an independent quality score.