GitHub
slack-proactive-intervention-patterns
메모리에서 7가지 개입 기회 패턴을 감지하는 지식 베이스. 조사 제안, 스케줄링, 문서화, 초안 작성, 연결 조율, 예측적 제안, 루틴 자동화 패턴의 시그널과 점수 계산 방법.
☆ 589View skill
blockchain computational chemistry AI Skills
Discover blockchain computational chemistry skills, compare source repositories and read the instructions for each workflow.
Categories: blockchain computational chemistry
blockchain computational chemistry Clear filters
Browse skills
GitHub
finite-horizon-lqr
Solving finite-horizon LQR via dynamic programming for MPC.
☆ 569View skill
GitHub
state-space-linearization
Linearizing nonlinear dynamics around operating points for control design.
☆ 569View skill
GitHub
tooluniverse
Use this skill when working with scientific research tools and workflows across bioinformatics, cheminformatics, genomics, structural biology, proteomics, and drug discovery. This skill provides access to 600+...
☆ 441View skill
GitHub
clinical-decision-support
Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommenda...
☆ 441View skill
GitHub
skill-researcher
Conduct general research using web search, documentation, and codebase exploration. Invoke for non-Lean research tasks.
☆ 431View skill
GitHub
bio-pathway-gsea
Gene Set Enrichment Analysis using clusterProfiler gseGO and gseKEGG. Uses a ranked gene list to find coordinated changes in gene sets without requiring arbitrary significance cutoffs. Detects subtle but coordi...
☆ 300View skill
GitHub
bio-transcription-translation
Transcribe DNA to RNA and translate to protein using Biopython. Use when converting between DNA, RNA, and protein sequences, finding ORFs, or using alternative codon tables.
☆ 300View skill
GitHub
bio-proteomics-data-import
Load and parse mass spectrometry data formats including mzML, mzXML, and quantification tool outputs like MaxQuant proteinGroups.txt. Handles common preprocessing steps like contaminant filtering and missing va...
☆ 300View skill
GitHub
bio-pathway-wikipathways
WikiPathways enrichment using clusterProfiler and rWikiPathways. Performs over-representation analysis and GSEA on community-curated biological pathways. WikiPathways is an open, collaborative platform with pat...
☆ 300View skill
GitHub
bio-metabolomics-pathway-mapping
Map metabolites to biological pathways using KEGG, Reactome, and MetaboAnalyst. Perform pathway enrichment and topology analysis. Use when interpreting metabolomics results in the context of biochemical pathway...
☆ 300View skill
GitHub
bio-metagenomics-amr-detection
Detect antimicrobial resistance genes using AMRFinderPlus, ResFinder, and CARD. Screen isolates and metagenomes for resistance determinants. Use when characterizing resistance profiles in clinical isolates, sur...
☆ 300View skill
GitHub
bio-de-deseq2-basics
Perform differential expression analysis using DESeq2 in R/Bioconductor. Use for analyzing RNA-seq count data, creating DESeqDataSet objects, running the DESeq workflow, and extracting results with log fold cha...
☆ 300View skill
GitHub
bio-alignment-statistics
Calculate alignment statistics including sequence identity, conservation scores, substitution matrices, and similarity metrics. Use for comparing alignment quality, measuring sequence divergence, and analyzing...
☆ 300View skill
GitHub
bio-hi-c-analysis-compartment-analysis
Detect A/B compartments from Hi-C data using cooltools and eigenvector decomposition. Identify active (A) and inactive (B) chromatin compartments from contact matrices.
☆ 300View skill
GitHub
bio-restriction-mapping
Create restriction maps showing enzyme cut positions on DNA sequences using Biopython Bio.Restriction. Visualize cut sites, calculate distances between sites, and generate text or graphical maps.
☆ 300View skill
GitHub
bio-blast-searches
Run remote BLAST searches against NCBI databases using Biopython Bio.Blast. Use for sequence similarity searches, identifying unknown sequences, finding homologs, and querying NCBI's nr/nt databases.
☆ 300View skill
GitHub
bio-pdb-geometric-analysis
Perform geometric calculations on protein structures using Biopython Bio.PDB. Use for measuring distances, angles, and dihedrals, finding neighbor atoms, superimposing structures, calculating RMSD, identifying...
☆ 300View skill
GitHub
bio-primer-design-primer-validation
Validate PCR primers for specificity, dimers, hairpins, and secondary structures using primer3-py thermodynamic calculations. Check self-complementarity, heterodimer formation, and 3' stability.
☆ 300View skill
GitHub
bio-sequence-properties
Calculate sequence properties like GC content, molecular weight, isoelectric point, and GC skew using Biopython. Use when analyzing sequence composition, computing physical properties, or comparing sequences.
☆ 300View skill
GitHub
bio-motif-search
Find patterns, motifs, and subsequences in biological sequences using Biopython. Use when searching for transcription factor binding sites, regulatory elements, or any sequence pattern. For restriction enzyme a...
☆ 300View skill
GitHub
bio-metabolomics-lipidomics
Specialized lipidomics analysis for lipid identification, quantification, and pathway interpretation. Covers LC-MS lipidomics with LipidSearch, MS-DIAL, and LipidMaps annotation. Use when analyzing lipid classe...
☆ 300View skill
GitHub
bio-pdb-structure-modification
Modify protein structures using Biopython Bio.PDB. Use for transforming coordinates, removing atoms or residues, adding new entities, modifying B-factors and occupancies, renumbering residues, and building stru...
☆ 300View skill
GitHub
bio-workflows-metabolomics-pipeline
End-to-end metabolomics workflow from raw MS data to pathway analysis. Orchestrates XCMS preprocessing, annotation, normalization, statistical analysis, and pathway mapping.
☆ 300View skill
The default order uses GitHub repository stars from our indexed data. Stars belong to the source repository and may be shared by multiple skills. They indicate repository interest, not skill installs or an independent quality score.