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pwwang AI Skills

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Explorez les skills IA publiés de pwwang et consultez leurs instructions source.

Statistiques de l’auteur

Skills indexés

33

Étoiles des dépôts des skills indexés

660

Forks du dépôt

132

Moyenne des étoiles par skill indexé

20

Les étoiles d’un dépôt peuvent se répéter entre ses skills.

33 skills

Explorer

GitHub

metabolicexpimputation

pwwang

Imputes missing/dropout values in scRNA-seq expression data to improve metabolic pathway analysis. This process handles sparsity common in single-cell RNA sequencing data by filling in zero values using advance...

GitHub

celltypeannotation

pwwang

Annotates cell clusters with biological cell type labels using multiple methods: direct assignment, ScType, scCATCH, hitype, or CellTypist. This process is essential for interpreting clustering results by assig...

GitHub

scrnametaboliclandscape

pwwang

Comprehensive metabolic landscape analysis pipeline for scRNA-seq data. This is an all-in-one process group performing complete metabolic pathway analysis including expression imputation, feature selection, pat...

GitHub

seuratclusteringofallcells

pwwang

Performs coarse clustering on ALL cells (including T cells, B cells, and non-T/B cells) before cell type selection. This process identifies broad cell populations to enable subsequent T/B cell selection via `TO...

GitHub

clustermarkersofallcells

pwwang

Finds marker genes for clusters of ALL cells before T/B cell selection. This process identifies differentially expressed genes across unsupervised clusters to help identify broad cell types (T cells, B cells, M...

GitHub

clustermarkers

pwwang

Finds differentially expressed genes (markers) for clusters of T/B cells using Seurat's FindMarkers function. Performs statistical testing between clusters, identifies cluster-defining genes, and automatically...

GitHub

pseudobulkdeg

pwwang

Performs pseudo-bulk differential gene expression analysis using DESeq2 or edgeR. Aggregates single-cell counts to sample-level pseudo-bulk data, then identifies differentially expressed genes between condition...

GitHub

metabolicpathwayheterogeneity

pwwang

Analyzes metabolic pathway heterogeneity within cell populations by calculating normalized enrichment scores (NES) for each pathway across different groups. Quantifies metabolic diversity and identifies pathway...

GitHub

cellcellcommunication

pwwang

Infer ligand-receptor interactions and cell-cell communication networks from single-cell RNA-seq data using the LIANA+ framework. Identifies potential signaling events between cell types based on gene expressio...

Le classement utilise les étoiles du dépôt GitHub indexé. Plusieurs skills peuvent partager ce nombre : ce n’est ni un nombre d’installations ni une note de qualité.