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Python library for working with geospatial vector data including shapefiles, GeoJSON, and GeoPackage files. Use when working with geographic data for spatial analysis, geometric operations, coordinate transform...
Integration with protocols.io API for managing scientific protocols. This skill should be used when working with protocols.io to search, create, update, or publish protocols; manage protocol steps and materials...
Phylogenetic tree toolkit (ETE). Tree manipulation (Newick/NHX), evolutionary event detection, orthology/paralogy, NCBI taxonomy, visualization (PDF/SVG), for phylogenomics.
High-performance toolkit for genomic interval analysis in Rust with Python bindings. Use when working with genomic regions, BED files, coverage tracks, overlap detection, tokenization for ML models, or fragment...
Create research posters using HTML/CSS that can be exported to PDF or PPTX. Use this skill ONLY when the user explicitly requests PowerPoint/PPTX poster format. For standard research posters, use latex-posters...
Differential gene expression analysis (Python DESeq2). Identify DE genes from bulk RNA-seq counts, Wald tests, FDR correction, volcano/MA plots, for RNA-seq analysis.
Interactive visualization library. Use when you need hover info, zoom, pan, or web-embeddable charts. Best for dashboards, exploratory analysis, and presentations. For static publication figures use matplotlib...
Creative research ideation and exploration. Use for open-ended brainstorming sessions, exploring interdisciplinary connections, challenging assumptions, or identifying research gaps. Best for early-stage resear...
Hardware-agnostic quantum ML framework with automatic differentiation. Use when training quantum circuits via gradients, building hybrid quantum-classical models, or needing device portability across IBM/Google...
Process-based discrete-event simulation framework in Python. Use this skill when building simulations of systems with processes, queues, resources, and time-based events such as manufacturing systems, service o...
Therapeutics Data Commons. AI-ready drug discovery datasets (ADME, toxicity, DTI), benchmarks, scaffold splits, molecular oracles, for therapeutic ML and pharmacological prediction.
Electronic lab notebook API integration. Access notebooks, manage entries/attachments, backup notebooks, integrate with Protocols.io/Jupyter/REDCap, for programmatic ELN workflows.
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for p...
Latch platform for bioinformatics workflows. Build pipelines with Latch SDK, @workflow/@task decorators, deploy serverless workflows, LatchFile/LatchDir, Nextflow/Snakemake integration.
Analyze and propose fixes for Dependabot security alerts
Audit and improve CLAUDE.md files in repositories. Use when user asks to check, audit, update, improve, or fix CLAUDE.md files. Scans for all CLAUDE.md files, evaluates quality against templates, outputs qualit...
This skill should be used when users need to discover Redpanda Connect components for their streaming pipelines. Trigger when users ask about finding inputs, outputs, processors, or other components, or when th...
This skill should be used when users need to create or debug Bloblang transformation scripts. Trigger when users ask about transforming data, mapping fields, parsing JSON/CSV/XML, converting timestamps, filteri...
This skill should be used when users need to create or fix Redpanda Connect pipeline configurations. Trigger when users mention "config", "pipeline", "YAML", "create a config", "fix my config", "validate my pip...
Guides Android code reviews with type-specific checklists and MVVM/Compose pattern validation. Use when reviewing Android PRs, pull requests, diffs, or local changes involving Kotlin, ViewModel, Composable, Rep...
This skill should be used when the user asks to "design agent tools", "create tool descriptions", "reduce tool complexity", "implement MCP tools", or mentions tool consolidation, architectural reduction, tool n...
This skill should be used when the user asks to "compress context", "summarize conversation history", "implement compaction", "reduce token usage", or mentions context compression, structured summarization, tok...
This skill should be used when the user asks to "fine-tune on books", "create SFT dataset", "train style model", "extract ePub text", or mentions style transfer, LoRA training, book segmentation, or author voic...
Template for creating new Agent Skills for context engineering. Use this template when adding new skills to the collection.
Le classement utilise les étoiles du dépôt GitHub indexé. Plusieurs skills peuvent partager ce nombre : ce n’est ni un nombre d’installations ni une note de qualité.