GitHub
reconnaissance
Systematic technology and market reconnaissance for extracting actionable intelligence from repositories, papers, and competitive landscapes.
☆ 20Voir le skill
Skills IA tools scientific computing
Découvrez les skills tools scientific computing, comparez leurs dépôts et consultez leurs instructions.
Catégories: tools scientific computing
tools scientific computing Effacer les filtres
Explorer
GitHub
clonalstats
Generate comprehensive clonality statistics and diversity visualizations for TCR/BCR repertoire analysis. Quantifies clonal expansion, measures diversity metrics (Shannon, Simpson, Gini), and creates publicatio...
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GitHub
scfgsea
Performs fast Gene Set Enrichment Analysis (GSEA) on single-cell data using fgsea R package. Identifies enriched biological pathways by ranking genes based on differential expression between cell groups. Genera...
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GitHub
cellcellcommunicationplots
Visualize cell-cell communication inference results from CellCellCommunication process. Creates publication-ready network diagrams, heatmaps, and interaction plots to help interpret ligand-receptor interactions...
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GitHub
metabolicfeatures
Performs enrichment analysis (GSEA-based) for metabolic pathways across different cell groups to identify significantly enriched pathways. Uses fast gene set enrichment analysis (fgsea package) to rank pathways...
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GitHub
cdr3clustering
Cluster TCR/BCR clones by CDR3 sequences using GIANA or ClusTCR (both Faiss-based). Adds `CDR3_Cluster` column to metadata for clonotype analysis.
☆ 20Voir le skill
GitHub
immunopipe-config
Master skill for generating immunopipe pipeline configurations. Determines pipeline architecture based on data type (scRNA-seq with or without scTCR/BCR-seq) and analysis requirements. Routes to individual proc...
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GitHub
seuratmap2ref
Map query single-cell datasets to high-quality reference atlases using Seurat's reference mapping workflow. Performs label transfer, UMAP projection, and integration with reference annotations without modifying...
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GitHub
research-synthesis
Guide when to use built-in tools (WebFetch, WebSearch) and MCP servers (Parallel Search, Perplexity, Context7) for research. Synthesize findings into narrative for braindump. Use when gathering data, examples,...
☆ 18Voir le skill
GitHub
hypothesis-testing
Guides scientific hypothesis development and testing methodology. Use when formulating research questions, developing testable hypotheses, designing experiments, or evaluating research approaches. Triggers on p...
☆ 18Voir le skill
GitHub
ethics
Research ethics, IRB compliance, and data privacy analysis.
☆ 18Voir le skill
GitHub
research-synthesis
Synthesizes research findings into coherent narratives with uncertainty quantification. Use when integrating findings from multiple sources, creating research summaries, drawing conclusions from evidence, or co...
☆ 18Voir le skill
GitHub
biologist-analyst
Analyzes living systems and biological phenomena through biological lens using evolution, molecular biology, ecology, and systems biology frameworks. Provides insights on mechanisms, adaptations, interactions,...
☆ 16Voir le skill
GitHub
dqmc-generate
Create HDF5 simulation files for DQMC with specified physical parameters. Use when setting up new simulations, specifying lattice size, interaction strength U, chemical potential mu, temperature (via dt and L),...
☆ 16Voir le skill
GitHub
dqmc-run
Execute DQMC Monte Carlo sweeps on HDF5 simulation files. Use when running simulations, checkpointing long runs, using the queue system for multiple files, or checking simulation status.
☆ 16Voir le skill
GitHub
dqmc-advanced
Advanced DQMC features including unequal-time measurements, analytic continuation, and queue system internals. Use when enabling dynamical correlations, performing MaxEnt continuation, or understanding HDF5 dat...
☆ 16Voir le skill
GitHub
gemini
Use Gemini AI for research, analysis, summarization, web search, and complex reasoning. Use when you need AI-powered research, code analysis, content summarization, or web search with synthesis.
☆ 16Voir le skill
GitHub
causal-loop-microsim-generator
This skill generates interactive Causal Loop Diagram (CLD) MicroSims using the vis-network JavaScript library. Use this skill when users need to create causal loop diagrams for systems thinking education, showi...
☆ 14Voir le skill
GitHub
market-research-and-competitive-analysis
TAM/SAM/SOM calculation, competitor analysis, and market trends identification. Use when analyzing markets, validating business ideas, or entering new markets.
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GitHub
claude-light
Expert assistant for conducting remote experiments with Claude-Light - a web-accessible RGB LED and spectral sensor instrument for statistics, regression, optimization, and design of experiments
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GitHub
vasp
Expert assistant for VASP (Vienna Ab initio Simulation Package) calculations - input file generation, parameter selection, workflow setup, and best practices for accurate DFT calculations
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GitHub
design-of-experiments
Expert guidance for Design of Experiments (DOE) in Python - interactive goal-driven design selection, classical DOE (factorial, response surface, screening), Bayesian optimization with Gaussian processes, model...
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GitHub
materials-databases
Expert assistant for accessing materials databases (AFLOW and Materials Project) - query crystal structures, materials properties, thermodynamic data, and computational results from comprehensive databases
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GitHub
materials-properties
Expert assistant for calculating materials properties from first-principles using ASE - structure relaxation, surface energies, adsorption, reaction barriers, phonons, elastic constants, and thermodynamic model...
☆ 14Voir le skill
Le classement utilise les étoiles du dépôt GitHub indexé. Plusieurs skills peuvent partager ce nombre : ce n’est ni un nombre d’installations ni une note de qualité.