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Skills IA Documentation

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GitHub

string-database

hxk622

Query STRING API for protein-protein interactions (59M proteins, 20B interactions). Network analysis, GO/KEGG enrichment, interaction discovery, 5000+ species, for systems biology.

GitHub

openalex-database

hxk622

Query and analyze scholarly literature using the OpenAlex database. This skill should be used when searching for academic papers, analyzing research trends, finding works by authors or institutions, tracking ci...

GitHub

using-superpowers

hxk622

开始任何对话时使用 - 确立如何查找和使用技能。在任何响应之前(包括澄清问题)都需要调用 Skill 工具。Use when starting any conversation - establishes how to find and use skills. If a skill might apply (even 1% cha...

GitHub

biomni

hxk622

Autonomous biomedical AI agent framework for executing complex research tasks across genomics, drug discovery, molecular biology, and clinical analysis. Use this skill when conducting multi-step biomedical rese...

GitHub

image-generation

hxk622

AI图像生成与编辑能力,基于 Nano Banana (Gemini Image) 实现文生图、图生图、图像编辑。适用于创意设计、营销素材、社交媒体内容、演示文稿配图等场景。支持多种风格、高分辨率输出(最高4K)、文字渲染、角色一致性保持。

GitHub

uniprot-database

hxk622

Direct REST API access to UniProt. Protein searches, FASTA retrieval, ID mapping, Swiss-Prot/TrEMBL. For Python workflows with multiple databases, prefer bioservices (unified interface to 40+ services). Use thi...

GitHub

neurokit2

hxk622

Comprehensive biosignal processing toolkit for analyzing physiological data including ECG, EEG, EDA, RSP, PPG, EMG, and EOG signals. Use this skill when processing cardiovascular signals, brain activity, electr...

GitHub

cirq

hxk622

Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or running quantum characterization experiments. Best for Google hardware, noise modeling, and...

GitHub

fluidsim

hxk622

Framework for computational fluid dynamics simulations using Python. Use when running fluid dynamics simulations including Navier-Stokes equations (2D/3D), shallow water equations, stratified flows, or when ana...

GitHub

sympy

hxk622

Use this skill when working with symbolic mathematics in Python. This skill should be used for symbolic computation tasks including solving equations algebraically, performing calculus operations (derivatives,...

GitHub

requesting-code-review

hxk622

完成任务、实现主要功能或合并前使用,验证工作是否满足要求。Use when completing tasks, implementing major features, or before merging to verify work meets requirements. Review early, review often.

GitHub

shap

hxk622

Model interpretability and explainability using SHAP (SHapley Additive exPlanations). Use this skill when explaining machine learning model predictions, computing feature importance, generating SHAP plots (wate...

GitHub

polars

hxk622

Fast in-memory DataFrame library for datasets that fit in RAM. Use when pandas is too slow but data still fits in memory. Lazy evaluation, parallel execution, Apache Arrow backend. Best for 1-100GB datasets, ET...

GitHub

hypothesis-generation

hxk622

Structured hypothesis formulation from observations. Use when you have experimental observations or data and need to formulate testable hypotheses with predictions, propose mechanisms, and design experiments to...

GitHub

medchem

hxk622

Medicinal chemistry filters. Apply drug-likeness rules (Lipinski, Veber), PAINS filters, structural alerts, complexity metrics, for compound prioritization and library filtering.

GitHub

cobrapy

hxk622

Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.

GitHub

scientific-critical-thinking

hxk622

Evaluate scientific claims and evidence quality. Use for assessing experimental design validity, identifying biases and confounders, applying evidence grading frameworks (GRADE, Cochrane Risk of Bias), or teach...

GitHub

denario

hxk622

Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing re...

GitHub

qiskit

hxk622

IBM quantum computing framework. Use when targeting IBM Quantum hardware, working with Qiskit Runtime for production workloads, or needing IBM optimization tools. Best for IBM hardware execution, quantum error...

GitHub

transformers

hxk622

This skill should be used when working with pre-trained transformer models for natural language processing, computer vision, audio, or multimodal tasks. Use for text generation, classification, question answeri...

GitHub

literature-review

hxk622

Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews,...

GitHub

biopython

hxk622

Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioin...

GitHub

hmdb-database

hxk622

Access Human Metabolome Database (220K+ metabolites). Search by name/ID/structure, retrieve chemical properties, biomarker data, NMR/MS spectra, pathways, for metabolomics and identification.

GitHub

iso-13485-certification

hxk622

Comprehensive toolkit for preparing ISO 13485 certification documentation for medical device Quality Management Systems. Use when users need help with ISO 13485 QMS documentation, including (1) conducting gap a...

Le classement utilise les étoiles du dépôt GitHub indexé. Plusieurs skills peuvent partager ce nombre : ce n’est ni un nombre d’installations ni une note de qualité.

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