Découvrez les skills databases bioinformatics, comparez leurs dépôts et consultez leurs instructions.
Gene annotations and TSS analysis using gcell. Use this skill when users ask about: - GENCODE gene annotations - Transcription start sites (TSS) - Gene coordinates and metadata - Transcript information - Queryi...
Cell type regulatory analysis using gcell. Use this skill when users ask about: - Loading pre-inferred cell types (GET model outputs) - Gene-by-motif matrices showing TF influence on genes - Gene Jacobian analy...
Causal network analysis using gcell. Use this skill when users ask about: - Inferring causal relationships from expression data - LiNGAM causal discovery algorithm - Regulatory network construction - Visualizin...
Protein structure and interaction analysis using gcell. Use this skill when users ask about: - Protein sequences from gene names - AlphaFold2 structure predictions and pLDDT scores - UniProt protein information...
Identify Sepsis-3 patients in MIMIC-IV using the consensus definition (SOFA >= 2 + suspected infection). Use for sepsis cohort studies, outcome research, or quality metrics.
Map equivalent concepts between MIMIC-IV and eICU databases. Use for multi-database studies, external validation, or understanding structural differences between databases.
Use parallel subagents for large-scale paper screening and deep dive analysis
Finds duplicate or near-duplicate images in FiftyOne datasets using brain similarity computation. Use when deduplicating datasets, finding similar images, or removing redundant samples.
Visualizes datasets in 2D using embeddings with UMAP or t-SNE dimensionality reduction. Use when exploring dataset structure, finding clusters, identifying outliers, or understanding data distribution.
Launch and manage D3 (DNA Discrete Diffusion) sampling experiments on SLURM clusters. This skill handles job submission, WandB tracking, and result management for genomic datasets (LentiMPRA, DeepSTARR, Promote...
Computational text analysis for sociology research using R or Python. Guides you through topic models, sentiment analysis, classification, and embeddings with systematic validation. Supports both traditional (L...
Structural biology analysis including protein structure validation, AlphaFold interpretation, and structural comparisons
Metabolomics-specific analysis strategies and domain knowledge
Genomics and transcriptomics analysis strategies
A specialized tool for designing efficient and specific gRNA sequences for CRISPR-Cas9 experiments.
Predicts 3D protein structures from amino acid sequences using ESMFold or AlphaFold3 (mock).
Designs guide RNA (gRNA) sequences for CRISPR-Cas9 editing, including off-target analysis. Use when a user needs to edit a gene or asks for gRNA sequences.
A production-grade cheminformatics toolkit for analyzing molecular properties, toxicity, and synthetic accessibility.
A unified interface for annotating single-cell RNA-seq data using Marker Genes, Deep Learning (CellTypist), or LLMs.
Classifies genetic variants according to ACMG (American College of Medical Genetics) guidelines.
R&D management expertise for R&D portfolio management, technology roadmapping, research methodology, patent strategy, lab management, academic partnerships, and regulatory pathways. Use when managing research p...
Perform gene set enrichment analysis using AI research providers. Analyzes lists of genes to identify biological themes, pathways, and functional associations.
Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing re...
This skill should be used when working with genomic interval data (BED files) for machine learning tasks. Use for training region embeddings (Region2Vec, BEDspace), single-cell ATAC-seq analysis (scEmbed), buil...
Le classement utilise les étoiles du dépôt GitHub indexé. Plusieurs skills peuvent partager ce nombre : ce n’est ni un nombre d’installations ni une note de qualité.