Découvrez les skills databases bioinformatics, comparez leurs dépôts et consultez leurs instructions.
First-time setup for protein design tools. Use this skill when: (1) User is new and hasn't run any tools yet, (2) Commands fail with "file not found" or "modal: command not found", (3) Modal authentication erro...
Validate protein designs using AlphaFold2 structure prediction. Use this skill when: (1) Validating designed sequences fold correctly, (2) Predicting binder-target complex structures, (3) Calculating confidence...
End-to-end binder design using BindCraft hallucination. Use this skill when: (1) Designing protein binders with built-in AF2 validation, (2) Running production-quality binder campaigns, (3) Using different desi...
ESM2 protein language model for embeddings and sequence scoring. Use this skill when: (1) Computing pseudo-log-likelihood (PLL) scores, (2) Getting protein embeddings for clustering, (3) Filtering designs by se...
End-to-end guidance for protein design pipelines. Use this skill when: (1) Starting a new protein design project, (2) Need step-by-step workflow guidance, (3) Understanding the full design pipeline, (4) Plannin...
Design protein sequences using ProteinMPNN inverse folding. Use this skill when: (1) Designing sequences for RFdiffusion backbones, (2) Redesigning existing protein sequences, (3) Fixing specific residues while...
Generate protein backbones using RFdiffusion, a diffusion-based generative model for de novo protein structure generation. Use this skill when: (1) Designing binder scaffolds for a target protein, (2) Generatin...
Access UniProt for protein sequence and annotation retrieval. Use this skill when: (1) Looking up protein sequences by accession, (2) Finding functional annotations, (3) Getting domain boundaries, (4) Finding h...
All-atom protein design using BoltzGen diffusion model. Use this skill when: (1) Need side-chain aware design from the start, (2) Designing around small molecules or ligands, (3) Want all-atom diffusion (not ju...
Quality control metrics and filtering thresholds for protein design. Use this skill when: (1) Evaluating design quality for binding, expression, or structure, (2) Setting filtering thresholds for pLDDT, ipTM, P...
Structure similarity search with Foldseek. Use this skill when: (1) Finding similar structures in PDB/AFDB databases, (2) Structural homology search, (3) Database queries by 3D structure, (4) Finding remote hom...
Structure prediction using Boltz-1/Boltz-2, an open biomolecular structure predictor. Use this skill when: (1) Predicting protein complex structures, (2) Validating designed binders, (3) Need open-source altern...
Analyze network structures, identify communities, measure centrality, and visualize relationships for social networks and organizational structures
Deep architectural context building for security audits. Use when conducting security reviews, building codebase understanding, mapping trust boundaries, or preparing for vulnerability analysis. Inspired by Tra...
Synthesize research findings for OAK planning using the oak.plan-research workflow. Use when consolidating findings from codebase exploration, comparing approaches, or creating research/*.md documents.
Guidance for designing fusion protein gBlock sequences from multiple protein sources. This skill applies when tasks involve combining proteins from PDB databases, plasmid files, and fluorescent protein database...
Guidance for designing and assembling multi-component fusion protein sequences, particularly for FRET biosensors and tagged constructs. This skill applies when tasks involve identifying proteins by spectral pro...
This skill provides guidance for fitting peaks in Raman spectroscopy data, particularly for materials like graphene. Use this skill when tasks involve Raman spectrum analysis, peak fitting (G peak, 2D peak, D p...
This skill provides guidance for FEAL cipher linear cryptanalysis tasks. It should be used when recovering encryption keys from FEAL-encrypted data using known plaintext-ciphertext pairs, implementing linear ap...
Guidance for Golden Gate assembly primer design and DNA assembly tasks. This skill should be used when designing primers for Golden Gate cloning, Type IIS restriction enzyme assembly, or multi-fragment DNA asse...
Guidance for DNA assembly tasks including Golden Gate assembly, Gibson assembly, and restriction enzyme-based cloning. This skill should be used when designing primers for Type IIS restriction enzymes (BsaI, Bs...
Specialized skill for designing primers to insert DNA sequences into circular plasmids using Q5 site-directed mutagenesis (SDM). This skill should be used when tasks involve inserting sequences into plasmids, d...
This skill provides guidance for tasks involving MobileSAM or Segment Anything Model (SAM) for cell segmentation, mask refinement, and polygon extraction from images. Use when working with SAM-based image segme...
Guide for Bayesian Network tasks involving structure learning, parameter fitting, intervention, and sampling. This skill should be used when working with pgmpy or similar libraries to recover DAG structures fro...
Le classement utilise les étoiles du dépôt GitHub indexé. Plusieurs skills peuvent partager ce nombre : ce n’est ni un nombre d’installations ni une note de qualité.