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Walk through a training tutorial as a user would, progressively building examples exactly as instructed, running all commands, and verifying results against solutions. Use when testing tutorials end-to-end or v...
Test a Nextflow script by running it, verifying outputs, testing resume functionality, and comparing results with documentation. Use when validating that example scripts work correctly and match their documenta...
Set up a Docker container for running Nextflow training examples. Handles basic setup, Docker-outside-of-Docker (DooD) for containerized processes, ARM Mac platform emulation, and troubleshooting. Use when you...
Verify that hl_lines attributes in markdown code blocks correctly highlight the intended lines. Use when reviewing documentation with code examples, especially Before/After comparisons, or when highlights seem...
Search markdown files, Nextflow scripts, and config files for TODO/FIXME comments, categorize by priority, and provide actionable recommendations. Use when you need to identify pending work or track technical d...
Run comprehensive validation and review checks including heading numbering, TODO/FIXME comments, Nextflow script conventions, orphaned files, admonition syntax, lesson structure, formatting, content accuracy, a...
Rust and blockchain development conventions including formatting (inline string interpolation), imports organization, checked arithmetic, error handling, unsafe code patterns, and documentation. Use for any Rus...
Deep dive review of Python file - fetches official docs, searches best practices, audits all usages in codebase. Use when user says "review file", "review this file", or "analyze this code" on a .py file. This...
Debug progression issues: locked content, missing badges, streak resets. Use when investigating why phase is locked, badge not awarded, or streak was lost.
Run ruff lint, ruff format, ty type-check, start the API, smoke test endpoints, then kill the API. Use after editing Python files to catch errors before commit.
Review and clean up code comments - remove redundant, obvious, outdated, or incorrect comments while preserving valuable documentation. Use when user says "review comments" on any code file.
Use when reviewing UI diffs, accessibility audits, or flaky UI tests to catch a11y regressions, semantic issues, keyboard/focus problems, and to recommend minimal fixes plus role-based test selectors.
Use when reviewing UI diffs, accessibility audits, or flaky UI tests to catch a11y regressions, semantic issues, keyboard/focus problems, and to recommend minimal fixes plus role-based test selectors.
Automatically number new markdown documentation files in the docs/ folder using a sequential numbering system (e.g., 00_, 01_, 02_).
Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core,...
This skill should be used when scientists need help with research problem selection, project ideation, troubleshooting stuck projects, or strategic scientific decisions. Use this skill when users ask to pitch a...
Generate clinical trial protocols for medical devices or drugs. This skill should be used when users say "Create a clinical trial protocol", "Generate protocol for [device/drug]", "Help me design a clinical stu...
Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering lo...
Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS sys...
Deep learning for single-cell analysis using scvi-tools. This skill should be used when users need (1) data integration and batch correction with scVI/scANVI, (2) ATAC-seq analysis with PeakVI, (3) CITE-seq mul...
Expert prompt engineering skill that transforms Claude into "Alpha-Prompt" - a master prompt engineer who collaboratively crafts high-quality prompts through flexible dialogue. Activates when user asks to "opti...
Guides systematic code refactoring following the DRY (Don't Repeat Yourself) principle. Use when user asks to eliminate code duplication, refactor repetitive code, apply DRY principle, or mentions code smells l...
Aggregates and summarizes the latest AI news from multiple sources including AI news websites and web search. Provides concise news briefs with direct links to original articles. Activates when user asks for 't...
Guides Claude in creating well-structured SKILL.md files following best practices. Provides clear guidelines for naming, structure, and content organization to make skills easy to discover and execute.
Le classement utilise les étoiles du dépôt GitHub indexé. Plusieurs skills peuvent partager ce nombre : ce n’est ni un nombre d’installations ni une note de qualité.